BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZH09FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1394 894 0.0
3x_Contig1600 422 e-118
>3x_Contig1394
Length = 5721
Score = 894 bits (451), Expect = 0.0
Identities = 451/451 (100%)
Strand = Plus / Plus
Query: 85 tggtgacttcacttttgctagtcatcattaatcctgtgttttgaagtttccaatttttat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4919 tggtgacttcacttttgctagtcatcattaatcctgtgttttgaagtttccaatttttat 4978
Query: 145 ttgatgattttttttttttttgcttgttatagtgtatttcccttttatttccttaaagaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4979 ttgatgattttttttttttttgcttgttatagtgtatttcccttttatttccttaaagaa 5038
Query: 205 atgtaatatgaatggaattttttatactaatataatattacatatttttataaaaataat 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5039 atgtaatatgaatggaattttttatactaatataatattacatatttttataaaaataat 5098
Query: 265 aataaataaatatcatattacgcttacatatgtaaaatgaaatcaaaactttctaactcc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5099 aataaataaatatcatattacgcttacatatgtaaaatgaaatcaaaactttctaactcc 5158
Query: 325 gcaaatttgaacaaggaacaagcaaagctagatcaagaactcatatccttcagtgtttct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5159 gcaaatttgaacaaggaacaagcaaagctagatcaagaactcatatccttcagtgtttct 5218
Query: 385 gagatttcttaaaatgatgaaggaagaatgaattatgatgaatgataattttcattgttt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5219 gagatttcttaaaatgatgaaggaagaatgaattatgatgaatgataattttcattgttt 5278
Query: 445 gttctattgatgatttgatcattaattgcttcatggaagtctgtttgaaaaatacacatt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5279 gttctattgatgatttgatcattaattgcttcatggaagtctgtttgaaaaatacacatt 5338
Query: 505 ggtatttttatatatatatatatataaatat 535
|||||||||||||||||||||||||||||||
Sbjct: 5339 ggtatttttatatatatatatatataaatat 5369
>3x_Contig1600
Length = 9359
Score = 422 bits (213), Expect = e-118
Identities = 249/260 (95%), Gaps = 1/260 (0%)
Strand = Plus / Minus
Query: 521 tatatatataaatattcttcatgataaattcataaacgtagtagacagtagttaaagaaa 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8978 tatatatataaatattcttcatgataaattcataaacgtagtagacagtagttaaagaaa 8919
Query: 581 tatatttgagttttggttcttcgaatgcagaagcgcanaagaattttttcttgatatgat 640
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 8918 tatatttgagttttggttcttcgaatgcagaagcgcaaaagaattttttctgaatatgat 8859
Query: 641 aaagcataacagtaccgtatcaataaaaagttctcatgaagccatagcctttcccattaa 700
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 8858 aaagcataacagtaccgtatcaataaaaagttctcatgaagccatagccttccccataag 8799
Query: 701 gatgacttttcattttttttgtgtttcgaagagctttttatgaattaaagattgcagcca 760
||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||
Sbjct: 8798 gatgacttttcattttttttgtgtttcgatgagctttttatgaataaaagatagcagcca 8739
Query: 761 attattttgaagaggaaaga 780
| || |||||||||||||||
Sbjct: 8738 a-taatttgaagaggaaaga 8720
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,783
Number of Sequences: 1807
Number of extensions: 24783
Number of successful extensions: 2153
Number of sequences better than 1.0e-20: 2
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)