BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZH09RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig355 1489 0.0
>3x_Contig355
Length = 1564
Score = 1489 bits (751), Expect = 0.0
Identities = 815/833 (97%), Gaps = 3/833 (0%)
Strand = Plus / Plus
Query: 47 ataacactatagcagcagcagcagcagtagcatcttgattcgcagcatttggatcatcgg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ataacactatagcagcagcagcagcagtagcatcttgattcgcagcatttggatcatcgg 139
Query: 107 agaagggaacgtcaacggagtcttcatactctgctagtacttcgacgtttggatattttt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 agaagggaacgtcaacggagtcttcatactctgctagtacttcgacgtttggatattttt 199
Query: 167 cggcgtcaacgaaaagcgcaccaccgttatagtaggagtaagcttcttggagattttcaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cggcgtcaacgaaaagcgcaccaccgttatagtaggagtaagcttcttggagattttcaa 259
Query: 227 ttccatttacttttaacttgacagtcttggcaccatcttctttgttatacttgaatccac 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttccatttacttttaacttgacagtcttggcaccatcttctttgttatacttgaatccac 319
Query: 287 tgaaagcaggcccccttgcaataccggggaacaacttcaaatcccttggaccagtgactt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgaaagcaggcccccttgcaataccggggaacaacttcaaatcccttggaccagtgactt 379
Query: 347 cataacaaggatcaccttttgcgaattcacaacgtcctgacccaaagtagccaccggcac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cataacaaggatcaccttttgcgaattcacaacgtcctgacccaaagtagccaccggcac 439
Query: 407 atattccgatgtataaaccaccgtctttggagacgaaatctctgatcttgggaatcactt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atattccgatgtataaaccaccgtctttggagacgaaatctctgatcttgggaatcactt 499
Query: 467 tcttacaatctctaacatacggtaaatccgcacctcctggaaataccaccacggaagtct 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcttacaatctctaacatacggtaaatccgcacctcctggaaataccaccacggaagtct 559
Query: 527 tcgtagtccaaggttcggtttctaacactcttgcagtaactggagaaacagcgtaatatg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcgtagtccaaggttcggtttctaacactcttgcagtaactggagaaacagcgtaatatg 619
Query: 587 gctccaacaataatcgtagggtctcaattgtattctt-acggactcaggtgatgtacctg 645
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 620 gctccaacaataatcgtagggtctcaattgtattcttcacggactcaggtgatgtacctg 679
Query: 646 caccattataaactaaaacgttcattgcagatgaagacgaagttgcagcagcagaatacc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caccattataaactaaaacgttcattgcagatgaagacgaagttgcagcagcagaatacc 739
Query: 706 ttcttagagcttctgatgttaaccggcttgtncaattacgaatcaacctgggaatgatac 765
||||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 740 ttcttagagctcctgatgtaaaccggcttgtccaattacgaatcaacctggaaatgatac 799
Query: 766 cnataaagaaatagtttcctttatacacaacactttttgatagaagtaagccctatttat 825
| |||||||||||||| |||| ||||||||| |||||||||| |||||| ||||||||
Sbjct: 800 caataaagaaatagttcccttataacacaacac-ttttgatagaggtaagcactatttat 858
Query: 826 atgttttccttccttacaaatgaaattccgggtgttgtttggatcttgataca 878
|||||| ||||||| |||| |||||| |||||||||| |||||||||||||||
Sbjct: 859 atgtttcccttcctaacaattgaaatcccgggtgttg-ttggatcttgataca 910
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6497
Number of Sequences: 1807
Number of extensions: 6497
Number of successful extensions: 226
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)