BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZH10RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1168 1612 0.0
>3x_Contig1168
Length = 4574
Score = 1612 bits (813), Expect = 0.0
Identities = 860/872 (98%), Gaps = 3/872 (0%)
Strand = Plus / Minus
Query: 48 catctattgacgaaattgatatatcaaagttttaaagctttgctcaaaaattgaaccaaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1523 catctattgacgaaattgatatatcaaagttttaaagctttgctcaaaaattgaaccaaa 1464
Query: 108 tcttgcatttcttctagagaagtagagtgagccatgcctctatatgatttgaaatcataa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1463 tcttgcatttcttctagagaagtagagtgagccatgcctctatatgatttgaaatcataa 1404
Query: 168 tctgacagatggaaatatttttcgaaaaacttcttagcgtctgaaccgtattgaattggg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1403 tctgacagatggaaatatttttcgaaaaacttcttagcgtctgaaccgtattgaattggg 1344
Query: 228 ataatagggtcctggtctccatgtccgtggaacactggtgtatctttattcttattttcg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1343 ataatagggtcctggtctccatgtccgtggaacactggtgtatctttattcttattttcg 1284
Query: 288 gcaattgaatctaagtcttctttctttaaacgacagaatcctgatagtgcaaagaaacca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1283 gcaattgaatctaagtcttctttctttaaacgacagaatcctgatagtgcaaagaaacca 1224
Query: 348 ccaagtttataaggagaagtaaccgtactagctaaagtcaatgcagcgccttgcgaaaac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1223 ccaagtttataaggagaagtaaccgtactagctaaagtcaatgcagcgccttgcgaaaac 1164
Query: 408 ccaccaagaatgatgttttcgggtgagataccatcatcgatttgttcttgaatgaaactg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163 ccaccaagaatgatgttttcgggtgagataccatcatcgatttgttcttgaatgaaactg 1104
Query: 468 ttaattactttcaaagaagatttaatcccttcaacgtctactctggcatctggattcgcc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1103 ttaattactttcaaagaagatttaatcccttcaacgtctactctggcatctggattcgcc 1044
Query: 528 cagtcgtaaatattgaaccaagcaggcatagacatacctccattcgcatcgattctcata 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 cagtcgtaaatattgaaccaagcaggcatagacatacctccattcgcatcgattctcata 984
Query: 588 tttggagcattagggaacacaaaccttgtatgcgcaaaagcagggcttctttgcaagtat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 tttggagcattagggaacacaaaccttgtatgcgcaaaagcagggcttctttgcaagtat 924
Query: 648 tcagctaggaaactccaacccgaacctgagtcacctaggccatggaagacaagaatcacg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tcagctaggaaactccaacccgaacctgagtcacctaggccatggaagacaagaatcacg 864
Query: 708 ttctttgcaggttgagcctttgangcaactctaacagcgttcaatggcattgtatcaggt 767
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 863 ttctttgcaggttgagcctttgaggcaactctaacagcgttcaatggcattgtatcaggt 804
Query: 768 ggtgggaatttatttcttatgaattcaaatatccaagttaaagcaaaagag-cagcttat 826
||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 803 ggtggaaatttatttcttatgaattcaaatatccaagtaaaagcaaaagagccagcttat 744
Query: 827 tattagtatgcttcaatattcacactgatggtgtcaatgccttcgaggttttgggtgatc 886
||| |||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||
Sbjct: 743 tataagtatgctcaaatatccacactgatggtgtcaatgcc-tcgaggttttggttgat- 686
Query: 887 ctcatttaattttttcatttaagggaaaaaac 918
||||||||| ||||||||||||||||||||||
Sbjct: 685 ctcatttaagtttttcatttaagggaaaaaac 654
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7841
Number of Sequences: 1807
Number of extensions: 7841
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)