BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC48ZH11RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1147 1511 0.0
>3x_Contig1147
Length = 6505
Score = 1511 bits (762), Expect = 0.0
Identities = 857/878 (97%), Gaps = 8/878 (0%)
Strand = Plus / Minus
Query: 48 cttcgcagaggcatacttgcgtattattttcactggctctaattctaaatactcagagtg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5373 cttcgcagaggcatacttgcgtattattttcactggctctaattctaaatactcagagtg 5314
Query: 108 tgattcgaattggatcatttattgtcctggtaaatcatcattttttctctatatacgaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5313 tgattcgaattggatcatttattgtcctggtaaatcatcattttttctctatatacgaga 5254
Query: 168 agagctgaagatcaccataataggggcataatgcgcgctaaatttgtgctgtgtcgttaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5253 agagctgaagatcaccataataggggcataatgcgcgctaaatttgtgctgcgtcgttaa 5194
Query: 228 tactgaaaagttcctgggttttcaaacatatgtactatatataaaaaaaacagtgtactg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5193 tactgaaaagttcctgggttttcaaacatatgtactatatataaaaaaaacagtgtactg 5134
Query: 288 tggccagtacattagcaatatcctaactgacaggattttctagcttactgccttgctgtc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5133 tggccagtacattagcaatatcctaactgacaggattttctagcttactgccttgctgtc 5074
Query: 348 attcggcgttcttctatttcctttattttattctgttcggcgttttccaataatcgagaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5073 attcggcgttcttctatttcctttattttattctgttcggcgttttccaataatcgagaa 5014
Query: 408 aatttcaaaatccgatccccttttcattcatcttccttttattctacctggctatggtag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5013 aatttcaaaatccgatccccttttcattcatcttccttttattctacctggctatggtag 4954
Query: 468 tatatttgttctagtgttttttctaactttgttaatatttcatcattgtcatactatatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4953 tatatttgttctagtgttttttctaactttgttaatatttcatcattgtcatactatatt 4894
Query: 528 gaaatataaagaaggcatttttaaatattgagagctgatttgatttgatttgaaccaatt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4893 gaaatataaagaaggcatttttaaatattgagagctgatttgatttgatttgaaccaatt 4834
Query: 588 taaactttagagaagaattgagttgttttgctaaaaaaacccaaaccagtcactcaccga 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4833 taaactttagagaagaattgagttgttttgctaaaaaaacccaaaccagtcactcaccga 4774
Query: 648 gttagtcaaaagggtatattcactgtgagattctagtgtagtcgattcagaagac-aaga 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4773 gttagtcaaaagggtatattcactgtgagattctagtgtagtcgattcagaagacaaaga 4714
Query: 707 tatacttttatctaataattggctcttactttcattgacccgactctagtgtgtttagaa 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4713 tatacttttatctaataattggctcttactttcattgacccgactctagtgtgtttagaa 4654
Query: 767 aaccgagatataaacttatc-attagagctaaagctaacttttcaaggaaca-gtcaaaa 824
|||||||||||||||||||| || |||| ||||||||||||| ||||||||| |||||||
Sbjct: 4653 aaccgagatataaacttatcaatcagag-taaagctaactttccaaggaacaggtcaaaa 4595
Query: 825 attgc-aataggttttttt-ccgggttcttgcaaattttcaatttacgtt-tgggaaaga 881
|| || ||||||||||||| |||| |||| |||||| | ||||| ||||| ||| ||||
Sbjct: 4594 atagcaaataggtttttttcccggcttctcgcaaatatccaattcacgttatggagaaga 4535
Query: 882 ggaaagctttcggcga-tctttgtcaggattgtccaac 918
||||||||| |||||| ||| |||||||||||||||||
Sbjct: 4534 ggaaagcttccggcgattctatgtcaggattgtccaac 4497
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8320
Number of Sequences: 1807
Number of extensions: 8320
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)