BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZA01FM1.SCF screened BAC_end
         (900 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1516                                                        1447   0.0  

>3x_Contig1516 
          Length = 8750

 Score = 1447 bits (730), Expect = 0.0
 Identities = 784/797 (98%), Gaps = 4/797 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   agatccgaacaaacgcaaggaattgggggagatagacattgaatggtgttccgtttagtt 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 agatccgaacaaacgcaaggaattgggggagatagacattgaatggtgttccgtttagtt 1493

                                                                        
Query: 147  tcataatgtataccataggatgtaagtgagaacggcggttgattcggtcacgcaaacgcc 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 tcataatgtataccataggatgtaagtgagaacggcggttgattcggtcacgcaaacgcc 1553

                                                                        
Query: 207  aataagactgttaaacatacgcaggattttgtcagcaagattcttttctgccgtttcttt 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 aataagactgttaaacatacgcaggattttgtcagcaagattcttttctgccgtttcttt 1613

                                                                        
Query: 267  ttaccgaaaatattcttgtgtcaggtcattcaaagatgacagaaaaacgtgatcaatgaa 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1614 ttaccgaaaatattcttgtgtcaggtcattcaaagatgacagaaaaacgtgatcaatgaa 1673

                                                                        
Query: 327  gagtgggcagaaaggtgggttgactgcagcgaccagattaggcaacagaaccgctgatca 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1674 gagtgggcagaaaggtgggttgactgcagcgaccagattaggcaacagaaccgctgatca 1733

                                                                        
Query: 387  tgagcatgtgaccttaaaatatcatggcttacgaactccaccaaaccacttggctcttcg 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1734 tgagcatgtgaccttaaaatatcatggcttacgaactccaccaaaccacttggctcttcg 1793

                                                                        
Query: 447  attgttagttttattttatttttttttttttttacaacaagagatttgtgaaatcatcat 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1794 attgttagttttattttatttttttttttttttacaacaagagatttgtgaaatcatcat 1853

                                                                        
Query: 507  ctcgagatgagatacgagatgaggtgaaatcaaatggtttgtgattgtaatcatggcgtc 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1854 ctcgagatgagatacgagatgaggtgaaatcaaatggtttgtgattgtaatcatggcgtc 1913

                                                                        
Query: 567  ttttctataagccataattgaaacataatgatggctgttacagtatcaggaaataccgga 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1914 ttttctataagccataattgaaacataatgatggctgttacagtatcaggaaataccgga 1973

                                                                        
Query: 627  cagtcaaccgctgaaagactgcaatgtgangtttttctcgtgaaaaagaagcgacagtgc 686
            |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 1974 cagtcaaccgctgaaagactgcaatgtgagttttttctcgtgaaaaagaagcgacagtgc 2033

                                                                        
Query: 687  ggaatgacaagacgagctggttcccagttctgttcagaacactctactgatagcgacaga 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2034 ggaatgacaagacgagctggttcccagttctgttcagaacactctactgatagcgacaga 2093

                                                                        
Query: 747  gttccttgtccattggacccttctcatactgtgtgcttgagtaagatgcgtgtgcatatg 806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2094 gttccttgtccattggacccttctcatactgtgtgcttgagtaagatgcgtgtgcatatg 2153

                                                                        
Query: 807  aggaaatgc-attaatttagacctgatgtttcttat-tagc-aaacagcgcg-aatttct 862
            ||||||||| || ||||||||| ||||||||| |||  ||| |||||||||| |||| | 
Sbjct: 2154 aggaaatgcaataaatttagacatgatgtttcatatcaagcaaaacagcgcgaaattcca 2213

                             
Query: 863  tggtttaaaaaaggact 879
            ||||||||| |||||||
Sbjct: 2214 tggtttaaagaaggact 2230


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,003
Number of Sequences: 1807
Number of extensions: 15003
Number of successful extensions: 2529
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)