BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA01RM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1618 0.0
>3x_Contig1749
Length = 22923
Score = 1618 bits (816), Expect = 0.0
Identities = 846/852 (99%), Gaps = 3/852 (0%)
Strand = Plus / Plus
Query: 47 tcctctatgttgct-aacatcttctctttcagctgcaacagatggctctgcattatcaga 105
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tcctctatgttgctcaacatcttctctttcagctgcaacagatggctctgcattatcaga 657
Query: 106 atcactttcattatcaggggttaagtctgctaccgttgcttcgtcatcatatcttactct 165
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 658 atcactttcattatcaggggttaagtctgctaccgttgcttcgtcatcctatcttactct 717
Query: 166 tttctgaccagctctagtgatctctctcaactgttttctaccagattttggaccagctct 225
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 718 tttctgaccagctctagtgatcactctcaactgttttctaccagattttggaccagctct 777
Query: 226 gattttactcatgtttgaggattcctttaccaaataaatgacacttttctactactccag 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gattttactcatgtttgaggattcctttaccaaataaatgacacttttctactactccag 837
Query: 286 caataaccaaatacaattaatatgatgtcaatttaatatactgctcatctcatgtcatct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 caataaccaaatacaattaatatgatgtcaatttaatatactgctcatctcatgtcatct 897
Query: 346 catcgcatcttataatcttagatgctcaatttttcatccgtgtttaatgatctcatcagg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 catcgcatcttataatcttagatgctcaatttttcatccgtgtttaatgatctcatcagg 957
Query: 406 tccaggtacttgaaaagaagtgtcgaccccttcctaccgtaaagtcatgtcacagcagac 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 tccaggtacttgaaaagaagtgtcgaccccttcctaccgtaaagtcatgtcacagcagac 1017
Query: 466 ctgaaacacctcaaagattacgtctaccttgagaagcgattaaacaagttcaaagtagtg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 ctgaaacacctcaaagattacgtctaccttgagaagcgattaaacaagttcaaagtagtg 1077
Query: 526 tgctcgtcatactgtttacctttttggtacgttccattccttttactactgcgcctgtaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 tgctcgtcatactgtttacctttttggtacgttccattccttttactactgcgcctgtaa 1137
Query: 586 actgactgttttcataaacttatataatacaaacaaaaaaaataatgttacatagaatta 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1138 actgactgttttcataaacttatataatacaaacaaaaaaaataatgttacatagaatta 1197
Query: 646 cgatggaaatcttcaagcaaaccagaagacgaaggagtcaagaaagaaggcttgagccat 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1198 cgatggaaatcttcaagcaaaccagaagacgaaggagtcaagaaagaaggcttgagccat 1257
Query: 706 caacaatagcccgtcactgtgcaaaattcaacgtttccaagatgccactaataaagaaga 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1258 caacaatagcccgtcactgtgcaaaattcaacgtttccaagatgccactaataaagaaga 1317
Query: 766 gtgtgcttcaaactctgcggatatttctcacgacaatgtatctatttctcgtgctgatta 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1318 gtgtgcttcaaactctgcggatatttctcacgacaatgtatctatttctcgtgctgatta 1377
Query: 826 ccattcccgataag-ttccaagttggtgggctgaactggggattgtcatttactgtaacg 884
||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1378 ccatt-ccgataagtttccaagttggtgggctgaactgtggattgtcatttactgtaacg 1436
Query: 885 ttatttgctctg 896
||||||||||||
Sbjct: 1437 ttatttgctctg 1448
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7434
Number of Sequences: 1807
Number of extensions: 7434
Number of successful extensions: 150
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)