BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA02FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1331 1540 0.0
>3x_Contig1331
Length = 5830
Score = 1540 bits (777), Expect = 0.0
Identities = 805/814 (98%), Gaps = 1/814 (0%)
Strand = Plus / Plus
Query: 89 tgaggttggtagaagtctctaaagagtcattatacagcgaccgcaagaacccatatgaag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 tgaggttggtagaagtctctaaagagtcattatacagcgaccgcaagaacccatatgaag 1946
Query: 149 atgaaaacccaacaaccagaatttacacaattatcaagaaaatggcgactgaaaatggta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 atgaaaacccaacaaccagaatttacacaattatcaagaaaatggcgactgaaaatggta 2006
Query: 209 gatttaataaaagattaccgtatgatgctattgtaagaacgattagatcaagaggtttca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 gatttaataaaagattaccgtatgatgctattgtaagaacgattagatcaagaggtttca 2066
Query: 269 ctatgctgcaactggtaagctgtatcaaagagtatgagtatcttaatgtttggcatcaaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 ctatgctgcaactggtaagctgtatcaaagagtatgagtatcttaatgtttggcatcaaa 2126
Query: 329 tagaagacggaaacaccttgctatttattgacgatattgatgatacaacggaagacaatt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 tagaagacggaaacaccttgctatttattgacgatattgatgatacaacggaagacaatt 2186
Query: 389 ctgatataactaacccttcgacgcaaaggacaccggatgaagatgtcgatatggaataat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 ctgatataactaacccttcgacgcaaaggacaccggatgaagatgtcgatatggaataat 2246
Query: 449 acctgactatctgcataccactaatctgttttgatccaataatgcctttattccttattt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 acctgactatctgcataccactaatctgttttgatccaataatgcctttattccttattt 2306
Query: 509 tagttttaaacctagtttaacgacaaatttgtattactatatactaacgtttaagtaact 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 tagttttaaacctagtttaacgacaaatttgtattactatatactaacgtttaagtaact 2366
Query: 569 tctaatgtgcctcttctcccagatagactgaacgatgcagaagtaatcacagtctatctt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 tctaatgtgcctcttctcccagatagactgaacgatgcagaagtaatcacagtctatctt 2426
Query: 629 tcaaaaccaaaattaatttgtcgaattcaaaatctatctattttgtgcataaacctagct 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2427 tcaaaaccaaaattaatttgtcgaattcaaaatctatctattttgtgcataaacctagct 2486
Query: 689 tatgccatctactacttagtctaaggtaagtttacatatntgtttacaacttctgaaacc 748
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2487 tatgccatctactacttagtctaaggtaagtttacatatttgtttacaacttctgaaacc 2546
Query: 749 tcagagagtagttcttgtttcctcttaggatcacaccatgagcccttcatactttgtctg 808
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 2547 tcagagagtagttcttgtttcctcttaggatcacaccatgagccttcaatactttgtctg 2606
Query: 809 gcgatcttag-ccaaactgncttagaccaaccaaatctggaatacacttccagatagttc 867
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2607 gcgatcttagcccaaactgctttagaccaaccaaatctggaatacacttccagatagttc 2666
Query: 868 tgtnagatgtacccttcaaaataagctggatcat 901
||| ||||||||||| ||||||||||||||||||
Sbjct: 2667 tgtaagatgtaccctccaaaataagctggatcat 2700
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6252
Number of Sequences: 1807
Number of extensions: 6252
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)