BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA02RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1626 0.0
>3x_Contig1426
Length = 8319
Score = 1626 bits (820), Expect = 0.0
Identities = 857/863 (99%), Gaps = 5/863 (0%)
Strand = Plus / Plus
Query: 46 caatacatatgctgaaggggnttggggnccgaaagtattatccgttccatcaaaacaaag 105
|||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 7050 caatacat-tgctgaagggg-ttgggg-ccgaaagtattatccgttccatcaaaacaaag 7106
Query: 106 tattatatttttactggtggtactctgaccagtgcccaaagaggatgatgccattgaatt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7107 tattatatttttactggtggtactctgaccagtgcccaaagaggatgatgccattgaatt 7166
Query: 166 tctaagaaaagcatagaagagctatgctattttttttggcacttttttcggcttgatgtc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7167 tctaagaaaagcatagaagagctatgctattttttttggcacttttttcggcttgatgtc 7226
Query: 226 tcgaaatactaggtttatatacagaagctgctcgagctggtgtatcgagcgccacatatt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7227 tcgaaatactaggtttatatacagaagctgctcgagctggtgtatcgagcgccacatatt 7286
Query: 286 acatccaatgctgtatgatcttttgtgtcagtggcatcaaaaagaaaaaaaatatctttc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7287 acatccaatgctgtatgatcttttgtgtcagtggcatcaaaaagaaaaaaaatatctttc 7346
Query: 346 gttacccgcatttgtgacagaaatttcactcaatctgaatgaggaagccagcatagatag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7347 gttacccgcatttgtgacagaaatttcactcaatctgaatgaggaagccagcatagatag 7406
Query: 406 aagagaattcaagggtgctacaaaggtaaatgtttaatcggtatctctattagctgattt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7407 aagagaattcaagggtgctacaaaggtaaatgtttaatcggtatctctattagctgattt 7466
Query: 466 aagtacccaaactttctttaacttatcaaatactgcgacatcttttaagattttccgaac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7467 aagtacccaaactttctttaacttatcaaatactgcgacatcttttaagattttccgaac 7526
Query: 526 acgttctacgtcggttgagtttgttagctgtaatccgactctaatcactagatctgctga 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7527 acgttctacgtcggttgagtttgttagctgtaatccgactctaatcactagatctgctga 7586
Query: 586 tttgctcgcaaaccctggtgactgagatagatatttttcaatggacgctttgagtacctc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7587 tttgctcgcaaaccctggtgactgagatagatatttttcaatggacgctttgagtacctc 7646
Query: 646 ggcgctcttctcgtccttctgtgtagcatctgattgaatgtcctctcttttaattntctc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 7647 ggcgctcttctcgtccttctgtgtagcatctgattgaatgtcctctcttttaattttctc 7706
Query: 706 ccgctctaacgtatcccggttcaattttcttgcaaacttgctgtcatttgtagataatgc 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7707 ccgctctaacgtatcccggttcaattttcttgcaaacttgctgtcatttgtagataatgc 7766
Query: 766 agtcctactctttcttattttacctgccctaccgaatttaccagtccaagtcggagtgcc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7767 agtcctactctttcttattttacctgccctaccgaatttaccagtccaagtcggagtgcc 7826
Query: 826 aacatcaaaccttttagtttgtttccgtgagttttttaaatgcatc-agtgcagatttga 884
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 7827 aacatcaaaccttttagtttgtttccgtgagtttttt-aatgcatcaagtgcagatttga 7885
Query: 885 cgttacgagtagcttctgcccca 907
|||||||||||||||||||||||
Sbjct: 7886 cgttacgagtagcttctgcccca 7908
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7024
Number of Sequences: 1807
Number of extensions: 7024
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)