BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA03FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig853 1332 0.0
>3x_Contig853
Length = 2329
Score = 1332 bits (672), Expect = 0.0
Identities = 787/820 (95%), Gaps = 4/820 (0%)
Strand = Plus / Minus
Query: 86 gatcgtttctgatgttgtagaaatcggtacacagttggtagaattggtagaaaccccagc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 gatcgtttctgatgttgtagaaatcggtacacagttggtagaattggtagaaaccccagc 1019
Query: 146 agattcttgccaagaagaagatcattatcaaaacgacattgttcaccaattggatcacgt 205
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1018 agattcttgccaagaagaagatcaagatcaaaacgacattgttcaccaattggatcacgt 959
Query: 206 tacacacctttgcttgtacagtctgacagtctttggtcagttgtggcaagtacttgatcc 265
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 tacacaccttggccatgacagtctgacagtctttggtcagttgtggcaagtacttgatcc 899
Query: 266 cgaaccatctgatattcaagaatggattggatagctcgaacatcaggaaaatacctgcgt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 cgaaccatctgatattcaagaatggattggatagctcgaacatcaggaaaatacctgcgt 839
Query: 326 agtagttgatgtaaggttttaaaccaatagcataaaccaccgtagagatcaaaccgtgca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 agtagttgatgtaaggttttaaaccaatagcataaaccaccgtagagatcaaaccgtgca 779
Query: 386 gcacgaatgggagggtagagtagaccaatgaaatgtagatatcccataggaagtacccaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gcacgaatgggagggtagagtagaccaatgaaatgtagatatcccataggaagtacccaa 719
Query: 446 ttgcgaaaacgcataccttcacgttatatgggtccatgccaaagatacgatcgtgagagt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttgcgaaaacgcataccttcacgttatatgggtccatgccaaagatacgatcgtgagagt 659
Query: 506 ttagatctggtttttcattgttatatgcaatggcctcgaaactgagataaagcacgatca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttagatctggtttttcattgttatatgcaatggcctcgaaactgagataaagcacgatca 599
Query: 566 gagattggatccaactcaccagacgaacggcactctggttgacaaggtctgcatgctgct 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gagattggatccaactcaccagacgaacggcactctggttgacaaggtctgcatgctgct 539
Query: 626 tttcctta-acttacgttggtctttcgtagtctccggattccaggattacctataagaag 684
|||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 538 tttccttagacttacgttggtctttcgtagtctccggatcccaggataacctataagaag 479
Query: 685 ctagaggtgggaataagacccgttgagataacaggaatagcgcatgatacccgacggcaa 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctagaggtgggaataagacccgttgagataacaggaatagcgcatgatacccgacggcaa 419
Query: 745 tgttcaacacagtgggtaaattggattgaatcacattccaagttatccatccatgggatt 804
||| |||||||||| ||||||||||| ||||||||||| |||| |||||||||| |||||
Sbjct: 418 tgtacaacacagtgtgtaaattggatagaatcacattcgaagtaatccatccattggatt 359
Query: 805 ccagatatggga-cacgttcttggtcaaatga-ggtgcgggagtaaggacatc-ccttgg 861
| |||||||||| ||||| || |||||||||| ||||||| ||||||||||| | | ||
Sbjct: 358 cgagatatgggatcacgtactcggtcaaatgagggtgcggaggtaaggacatcacatagg 299
Query: 862 tcgggaacaaatttatttgtccggaaacaattgctggaac 901
||| ||||| || ||| ||| |||||||| |||||||||
Sbjct: 298 tcgtgaacagatctatctgttcggaaacagctgctggaac 259
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5392
Number of Sequences: 1807
Number of extensions: 5392
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)