BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA03RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig727 1643 0.0
3x_Contig631 666 0.0
3x_Contig1696 246 7e-65
3x_Contig939 190 3e-48
3x_Contig354 190 3e-48
3x_Contig1204 151 3e-36
3x_Contig582 147 5e-35
3x_Contig1376 145 2e-34
3x_Contig1747 143 7e-34
3x_Contig1718 143 7e-34
3x_Contig1088 143 7e-34
>3x_Contig727
Length = 2486
Score = 1643 bits (829), Expect = 0.0
Identities = 854/860 (99%), Gaps = 2/860 (0%)
Strand = Plus / Minus
Query: 37 gcttccaaaggcat-cccatgtttcttctattatggccatgctcgtgggtaaagcatatt 95
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 gcttccaaaggcattcccatgtttcttctattatggccatgctcgtgggtaaagcatatt 1463
Query: 96 taccacaacctattgtgtcatctgtggccccttttacatgacaaaagtaagtcggttata 155
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1462 taccagaacctattgtgtcatctgtggccccttttacatgacaaaagtaagtcggttata 1403
Query: 156 ttctattcttgtcgtaaatgtttcaagaatgaagcggtggctcaatggtagagctttcga 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1402 ttctattcttgtcgtaaatgtttcaagaatgaagcggtggctcaatggtagagctttcga 1343
Query: 216 ctccagttaaattctgggaattttccaaggaaacaaaattgcaatcgaagggttgcaggt 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 ctccagttaaattctgggaattttccaaggaaacaaaattgcaatcgaagggttgcaggt 1283
Query: 276 tcaattcctgtccgtttcattttttaacatttttgcatagctagtcacatgactactttt 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 tcaattcctgtccgtttcattttttaacatttttgcatagctagtcacatgactactttt 1223
Query: 336 gccacgtggattatgattttgtccaataaactctcatcgaatttactattccgcgatagt 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1222 gccacgtggattatgattttgtccaataaactctcatcgaatttactattccgcgatagt 1163
Query: 396 ttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattccccgtcgcgga 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1162 ttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattccccgtcgcgga 1103
Query: 456 ggaatttttttacatttttgtatcaaggtacaatctcatcctaaaacccattgtagtaca 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 ggaatttttttacatttttgtatcaaggtacaatctcatcctaaaacccattgtagtaca 1043
Query: 516 gaaacagagaagcattattaacatacactgaacagagactctaaccttatcaatcctcac 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 gaaacagagaagcattattaacatacactgaacagagactctaaccttatcaatcctcac 983
Query: 576 atgcccaatgttgtactttcttcaagattaacgaataatgattcagtgttcttgcaggaa 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 atgcccaatgttgtactttcttcaagattaacgaataatgattcagtgttcttgcaggaa 923
Query: 636 tggattaaaccttcggtaaggccttattatttaaagaatgaaaagacgaaattctggcca 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 tggattaaaccttcggtaaggccttattatttaaagaatgaaaagacgaaattctggcca 863
Query: 696 gaacaacgtgaactggtaacggacttactagaacatgatatcatagagtcagctttccaa 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gaacaacgtgaactggtaacggacttactagaacatgatatcatagagtcagctttccaa 803
Query: 756 acggctttgaatcccgcacctcagaggntcgtcagaaattgttaaattccatagagtaaa 815
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 802 acggctttgaatcccgcacctcagaggttcgtcag-aattgttaaattccatagagtaaa 744
Query: 816 cgattaccccgtttatgcaacgattagagactctacagcattaattctatgctactttac 875
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 743 cgattacaccgtttatgcaacgattagagactctacagcattaattctatgctacttcac 684
Query: 876 tgtagactgcgtgctagatt 895
||||||||||||||||||||
Sbjct: 683 tgtagactgcgtgctagatt 664
>3x_Contig631
Length = 2339
Score = 666 bits (336), Expect = 0.0
Identities = 392/407 (96%), Gaps = 3/407 (0%)
Strand = Plus / Minus
Query: 385 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 1021
Query: 445 cccgtcgcggagga-atttttttacatttttgtatcaaggtacaatctcatcctaaaacc 503
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1020 cccgtcgcggagtatatttttttacatttttgtatcaaggtacaatctcatcctaacccc 961
Query: 504 cattgtagtacagaaacagagaagcattattaacatacactgaacag-agactctaacct 562
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 960 cattgtagtacagaaacagagaagcattattaacatacactgaacaggagactctaacct 901
Query: 563 tatcaatcctcacatgcccaatgttgtactttcttcaagattaacgaataatgattcagt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 tatcaatcctcacatgcccaatgttgtactttcttcaagattaacgaataatgattcagt 841
Query: 623 gttcttgcaggaatggattaaaccttcggtaaggccttattatttaaagaatgaaaagac 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 gttcttgcaggaatggattaaaccttcggtaaggccttattatttaaagaatgaaaagac 781
Query: 683 gaaattctggccagaacaacgtga-actggtaacggacttactagaacatgatatcatag 741
|||||||||||||||||||||||| |||||| ||||||||||||| ||||||| ||||||
Sbjct: 780 gaaattctggccagaacaacgtgacactggtcacggacttactagcacatgatctcatag 721
Query: 742 agtcagctttccaaacggctttgaatcccgcacctcagaggntcgtc 788
|||||||||||| ||||||||| ||||||||||| |||| |||||
Sbjct: 720 agtcagctttccccacggctttgcctcccgcacctccgaggttcgtc 674
>3x_Contig1696
Length = 16725
Score = 246 bits (124), Expect = 7e-65
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 177 ttcaagaatgaagcggtggctcaatggtagagctttcgactccagttaaattctgggaat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ttcaagaatgaagcggtggctcaatggtagagctttcgactccagttaaattctgggaat 769
Query: 237 tttccaaggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcatt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tttccaaggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcatt 709
Query: 297 tttt 300
||||
Sbjct: 708 tttt 705
>3x_Contig939
Length = 3877
Score = 190 bits (96), Expect = 3e-48
Identities = 112/116 (96%), Gaps = 1/116 (0%)
Strand = Plus / Plus
Query: 184 atgaagcggtggctcaatggtagagctttcgactccagttaaattctgggaattttccaa 243
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
Sbjct: 2792 atgaagcggtggctcaatggtagagctttcgactccagttaaatcctgg-aattttctga 2850
Query: 244 ggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcattttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2851 ggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcattttt 2906
>3x_Contig354
Length = 1443
Score = 190 bits (96), Expect = 3e-48
Identities = 115/120 (95%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 180 aagaatgaagcggtggctcaatggtagagctttcgactccagttaaattctgggaatttt 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 958 aagaatgaagcggtggctcaatggtagagctttcgactccagttaaatcctggaaattt- 1016
Query: 240 ccaaggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcattttt 299
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 ctatggaaacaaaattgcaatcgaagggttgcaggttcaattcctgtccgtttcattttt 1076
>3x_Contig1204
Length = 5869
Score = 151 bits (76), Expect = 3e-36
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 381 ctattccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttca 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5714 ctattccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttca 5773
Query: 441 attccccgtcgcggag 456
||||||||||||||||
Sbjct: 5774 attccccgtcgcggag 5789
>3x_Contig582
Length = 2827
Score = 147 bits (74), Expect = 5e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 385 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 1773
Query: 445 cccgtcgcggagga 458
||||||||||||||
Sbjct: 1774 cccgtcgcggagga 1787
>3x_Contig1376
Length = 7449
Score = 145 bits (73), Expect = 2e-34
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 385 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6411 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 6470
Query: 445 cccgtcgcggaggaatttttt 465
|||||||||||| |||||||
Sbjct: 6471 cccgtcgcggagtgatttttt 6491
>3x_Contig1747
Length = 15671
Score = 143 bits (72), Expect = 7e-34
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 385 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2462 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 2403
Query: 445 cccgtcgcggag 456
||||||||||||
Sbjct: 2402 cccgtcgcggag 2391
>3x_Contig1718
Length = 19496
Score = 143 bits (72), Expect = 7e-34
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 385 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4332 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 4273
Query: 445 cccgtcgcggag 456
||||||||||||
Sbjct: 4272 cccgtcgcggag 4261
>3x_Contig1088
Length = 4585
Score = 143 bits (72), Expect = 7e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 385 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1440 tccgcgatagtttaatggttagaattcgcgcttgtcgcgtgcgagatcggggttcaattc 1499
Query: 445 cccgtcgcggag 456
||||||||||||
Sbjct: 1500 cccgtcgcggag 1511
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6301
Number of Sequences: 1807
Number of extensions: 6301
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 11
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)