BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA04RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig399 1588 0.0
>3x_Contig399
Length = 2300
Score = 1588 bits (801), Expect = 0.0
Identities = 849/859 (98%), Gaps = 5/859 (0%)
Strand = Plus / Plus
Query: 47 tgtggtaccctgggaatgggccactacggtaagcattctcacacttattttgcttttttt 106
|||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct: 281 tgtggtaccctgggaatgggccactaaggtaagc-ttctcaaacttattttgcttttttt 339
Query: 107 ggaggacactttcaataagggcttca-ggtcatatctggtcatagaatctagatcccaat 165
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 340 ggaggacactttcaataagggcttcaaggtcatatctggtcatagaatctagatcccaat 399
Query: 166 cccattcaccgttgggggtcagcttttctctatcccatttagagttgaatccacaacgat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cccattcaccgttgggggtcagcttttctctatcccatttagagttgaatccacaacgat 459
Query: 226 tatttcctaaccacacatcgtagcccgaatcgtgcatgtaataagctaatgacttcctgc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tatttcctaaccacacatcgtagcccgaatcgtgcatgtaataagctaatgacttcctgc 519
Query: 286 cactagacgcaaaagaaccactactttgtaaaagtccatgtaacattaaaacagggtact 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cactagacgcaaaagaaccactactttgtaaaagtccatgtaacattaaaacagggtact 579
Query: 346 tcgtgtttgtcttcccctcgttctcgtttctcaaatgccaaagctctaaaatgaagccat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tcgtgtttgtcttcccctcgttctcgtttctcaaatgccaaagctctaaaatgaagccat 639
Query: 406 cctttgttgttacttcatattcatcgatgataatattgtattgggaatagtaatactgga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 cctttgttgttacttcatattcatcgatgataatattgtattgggaatagtaatactgga 699
Query: 466 gatttggaactagcttcaaatcttcagcagacaagatatcggaaaatggattgaaatcag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gatttggaactagcttcaaatcttcagcagacaagatatcggaaaatggattgaaatcag 759
Query: 526 agtctttaagttccgttcttcttgatatggtac-gatcatactcgatattgtttacatca 584
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 760 agtctttaagttccgttcttcttgatatggtacggatcatactcgatattgtttacatca 819
Query: 585 tcgacttccacatcgacttccagtggaactagggagctgaacgactcggtccttctgcgc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tcgacttccacatcgacttccagtggaactagggagctgaacgactcggtccttctgcgc 879
Query: 645 accatatgtgaatggccagttgtttgaggtgtgatcacattagcggccctggtatcacgc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 accatatgtgaatggccagttgtttgaggtgtgatcacattagcggccctggtatcacgc 939
Query: 705 ggatctaatatgatacgctgtttgcgcttgagcagatgggacgtanagaaattgtgccat 764
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 940 ggatctaatatgatacgctgtttgcgcttgagcagatgggacgtaaagaaattgtgccat 999
Query: 765 attgcacagatcattaggacagtaaggaagcataccgttattagtcgcgaaacgactgca 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 attgcacagatcattaggacagtaaggaagcataccgttattagtcgcgaaacgactgca 1059
Query: 825 tggtaccatttttgaaccatagcaaaccactcagatgctaactactgtgcccact-attc 883
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1060 tggtaccatttttgaaccatagcaaaccactcagatgctaactactgtg-ccactaattc 1118
Query: 884 agaagctattanattaatt 902
||||||||| | |||||||
Sbjct: 1119 agaagctataaaattaatt 1137
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4972
Number of Sequences: 1807
Number of extensions: 4972
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)