BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA05FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1746 1530 0.0
>3x_Contig1746
Length = 26672
Score = 1530 bits (772), Expect = 0.0
Identities = 817/827 (98%), Gaps = 5/827 (0%)
Strand = Plus / Plus
Query: 89 ccatctacaaaagcatgagataaagcttctgtggtctgagcttctgatagacccaacatc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22236 ccatctacaaaagcatgagataaagcttctgtggtctgagcttctgatagacccaacatc 22295
Query: 149 ttggaaaccacagcagtggtagctactttgaccaaaacaacgtggtccaatcctacctta 208
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 22296 ttggaaaccacagcagtggtagcaactttgaccaaaacaacgtggtccaatcctacctta 22355
Query: 209 ttaaaggaattc-cttaggcaataataccttgaatctcatgtgctttgatcatagcttct 267
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22356 ttaaaggaattctccaaggcaataataccttgaatctcatgtgctttgatcatagcttct 22415
Query: 268 aacacatctttcacggtgaataatcttccctcatcacctccggtggcctttgacaatcta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22416 aacacatctttcacggtgaataatcttccctcatcacctccggtggcctttgacaatcta 22475
Query: 328 gttaaatgatctgccacggcaagaataccacctaaattatcagagggatgtccccactct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22476 gttaaatgatctgccacggcaagaataccacctaaattatcagagggatgtccccactct 22535
Query: 388 gcagctaaccaacaatcattgaaatccaaccaacgaattaaagttccgatagcaaacgca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22536 gcagctaaccaacaatcattgaaatccaaccaacgaattaaagttccgatagcaaacgca 22595
Query: 448 cctttcacagggtccattctatatttagtacccaacactttggtaccgttaggtacaatc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22596 cctttcacagggtccattctatatttagtacccaacactttggtaccgttaggtacaatc 22655
Query: 508 gtgccaggcacaattggcttgataaggtttttaggttgatcatatttcaaagcagccaaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22656 gtgccaggcacaattggcttgataaggtttttaggttgatcatatttcaaagcagccaaa 22715
Query: 568 ccacaacctaatgtgtccaataaacagagccttgcagtttcataggcttctggagaagtg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22716 ccacaacctaatgtgtccaataaacagagccttgcagtttcataggcttctggagaagtg 22775
Query: 628 atacctttattgtgaacataagaagaaatttttcttaatacttcatctgcttctggtctc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22776 atacctttattgtgaacataagaagaaatttttcttaatacttcatctgcttctggtctc 22835
Query: 688 ttattatcgatgttaatggcttcctgagaatagtaatttttcatactattcaattgagtt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22836 ttattatcgatgttaatggcttcctgagaatagtaatttttcatactattcaattgagtt 22895
Query: 748 gcaataccgttattaacgaatgtcgttggcctcttgtatgataatctggctatattgtta 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22896 gcaataccgttattaacgaatgtcgttggcctcttgtatgataatctggctatattgtta 22955
Query: 808 acacttgatctagctgattgacgtagcattgttaacttaaaattttg-ttgaacttcttt 866
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 22956 acacttgatctagctgattgacgtagcattgttaactt--aattttgtttgaacttcttt 23013
Query: 867 ctatactacttctcttaac-aaatgtcaattaaatatcagctaaacc 912
||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 23014 ctatactacttctctaatcaaaatgtcaattaaatatcagctaaacc 23060
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6107
Number of Sequences: 1807
Number of extensions: 6107
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)