BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA05RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig690 1683 0.0
>3x_Contig690
Length = 2822
Score = 1683 bits (849), Expect = 0.0
Identities = 858/861 (99%)
Strand = Plus / Minus
Query: 47 tatgagggactacacactggtaatgatgtcgatatacccaatagcatcaaagggaaagac 106
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1182 tatgagggactagacactggtaatgatgttgatatacccaatagcatcaaagggaaagac 1123
Query: 107 ttaatgataatgaaaaaagttcttgagaaagtgaggcataagactaaagctatcaacaag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1122 ttaatgataatgaaaaaagttcttgagaaagtgaggcataagactaaagctatcaacaag 1063
Query: 167 aacctattagccttggagaatgttttgttggatagggctgctgagatcggagacaatgat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 aacctattagccttggagaatgttttgttggatagggctgctgagatcggagacaatgat 1003
Query: 227 gctatatcgctcttatgttttgatgttctaaaggatccagacagtaatactgaagatgac 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 gctatatcgctcttatgttttgatgttctaaaggatccagacagtaatactgaagatgac 943
Query: 287 gtatctcatgcaaagaaattgattaagaacctctatcaaatgaatcaccctttaaccgtc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 gtatctcatgcaaagaaattgattaagaacctctatcaaatgaatcaccctttaaccgtc 883
Query: 347 aaactaactgctgatatagctctgaagaaccatgacgatgctactgccgaagtgtactat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 aaactaactgctgatatagctctgaagaaccatgacgatgctactgccgaagtgtactat 823
Query: 407 atgaaatttttggatttacagaatgatactttcttagctggagaagtatacggtcaattg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 atgaaatttttggatttacagaatgatactttcttagctggagaagtatacggtcaattg 763
Query: 467 ggccagatccactttagaaaaccgaatcttattgaagcagagaaatgtttcttaaaatca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ggccagatccactttagaaaaccgaatcttattgaagcagagaaatgtttcttaaaatca 703
Query: 527 atcaaactttgtcctattgattactcggtacgatcgtactttttgttaggacaaatgtat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 atcaaactttgtcctattgattactcggtacgatcgtactttttgttaggacaaatgtat 643
Query: 587 gtgaataacgatatatttaaagccaggtacttaattgaaagcagtgccacccaaggcttc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gtgaataacgatatatttaaagccaggtacttaattgaaagcagtgccacccaaggcttc 583
Query: 647 aaggaatcatttagaacactagggttgctcgaaatgaattacttcaagaattaccccaaa 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aaggaatcatttagaacactagggttgctcgaaatgaattacttcaagaattaccccaaa 523
Query: 707 gctcaggaatggtttaagttgggaatggaactctatgatactgaatgtttcgttggctat 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gctcaggaatggtttaagttgggaatggaactctatgatactgaatgtttcgttggctat 463
Query: 767 ttcgattgtacaatgaaaaataatgaattattgctggctaagagatgttatgaaagtatg 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttcgattgtacaatgaaaaataatgaattattgctggctaagagatgttatgaaagtatg 403
Query: 827 gaaaagcttgctgaaaacaatcaagatgttaatcgactctttgaggatttcagctcccat 886
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 402 gaaaagcttgctgaaaacaatcaagatgtaaatcgactctttgaggatttcagctcccat 343
Query: 887 agagcatcagatattcaaaaa 907
|||||||||||||||||||||
Sbjct: 342 agagcatcagatattcaaaaa 322
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7199
Number of Sequences: 1807
Number of extensions: 7199
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)