BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA07FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1415 0.0
>3x_Contig1652
Length = 14842
Score = 1415 bits (714), Expect = 0.0
Identities = 789/812 (97%), Gaps = 2/812 (0%)
Strand = Plus / Plus
Query: 87 ctaagttggaggaatcgaagaaagaaaaggagaagcaacgtaagaaggacttcttctcca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12567 ctaagttggaggaatcgaagaaagaaaaggagaagcaacgtaagaaggacttcttctcca 12626
Query: 147 aaaacggtaaaaaaagacaattcaacgacaatgacacaagtgatgttatgtcttccaaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12627 aaaacggtaaaaaaagacaattcaacgacaatgacacaagtgatgttatgtcttccaaga 12686
Query: 207 aaaggaaattatttatttattttaacctatttacattgcataatttgaatgatagagtat 266
||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12687 aaaggaaataaactatgtattttaacctatttacattgcataatttgaatgatagagtat 12746
Query: 267 aaagtaattgttaagaaccaaaatgaactactgtattagttaagagtcgcatttggagtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12747 aaagtaattgttaagaaccaaaatgaactactgtattagttaagagtcgcatttggagtt 12806
Query: 327 gattctgagctggagattttctatgttaatgcaattctaagagaccatgagattctgaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12807 gattctgagctggagattttctatgttaatgcaattctaagagaccatgagattctgaaa 12866
Query: 387 catagctaagtattttatgcatatatgattatagttattcttctccatgcttattaggtg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12867 catagctaagtattttatgcatatatgattatagttattcttctccatgcttattaggtg 12926
Query: 447 atatttgcagttattatatatcgttagtagcgcttgcttaactacttaaatatattcaga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12927 atatttgcagttattatatatcgttagtagcgcttgcttaactacttaaatatattcaga 12986
Query: 507 tagccacttgaaggcttcagagtaaccagacttcatgacaacggaacacatgaacaactc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12987 tagccacttgaaggcttcagagtaaccagacttcatgacaacggaacacatgaacaactc 13046
Query: 567 gataggtctttgaccttcaattttggtatatccagttgtgttcatcaaacccaatgcagc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13047 gataggtctttgaccttcaattttggtatatccagttgtgttcatcaaacccaatgcagc 13106
Query: 627 tctcaattcagtttcagaaacggcacttggagagtcaatcttgttacccaagacagcana 686
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 13107 tctcaattcagtttcagaaacggcacttggagagtcaatcttgttacccaagacagcaaa 13166
Query: 687 tgggacgttgtccatttccttgattt-gaacanagcatccaattcaatacgtgcttcgtt 745
||| |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 13167 tggaacgttgtccaattccttgatttggaacaaagcatccaattcaatacgtgcttcgtt 13226
Query: 746 aaatctctctgggtcagcagcatccacttgggacacaataccattaacttctgggaaaaa 805
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct: 13227 aaatctctctgggtcagcagcatccactaggaacacaataccattaacttctgggaaata 13286
Query: 806 attctttcacaatctacgtgcttgcaaatgtcccact-aatcaaaagtgggggatttgat 864
|| ||| |||||||||||||||||||||||||| || |||||||||||| | |||||||
Sbjct: 13287 atccttccacaatctacgtgcttgcaaatgtccacctaaatcaaaagtggtgaatttgat 13346
Query: 865 tttaccgatcgcccattcttctaaagttgggt 896
|||||||||||| ||||||| |||||||||
Sbjct: 13347 attaccgatcgccaattcttcagaagttgggt 13378
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7234
Number of Sequences: 1807
Number of extensions: 7234
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)