BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA07RM1.SCF screened BAC_end
(891 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1342 1172 0.0
>3x_Contig1342
Length = 7422
Score = 1172 bits (591), Expect = 0.0
Identities = 636/648 (98%), Gaps = 4/648 (0%)
Strand = Plus / Plus
Query: 47 cgaataataaactccacattgcaccaactcatccacaacttgtatatatatgtatgtgtg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3906 cgaataataaactccacattgcaccaactcatccacaacttgtatatatatgtatgtgtg 3965
Query: 107 tatattaacgtcacaaataaaatgaaaatagctacacggctgtttatctaagttagcgac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3966 tatattaacgtcacaaataaaatgaaaatagctacacggctgtttatctaagttagcgac 4025
Query: 167 atccgtatttgtaaagacaattgaccaatgctgtggccatcatcaagctgtaaaatccaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4026 atccgtatttgtaaagacaattgaccaatgctgtggccatcatcaagctgtaaaatccaa 4085
Query: 227 atcgaggacaaacagacgcaaccatttcggactgttgtcggaagccttatacacccgtgc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4086 atcgaggacaaacagacgcaaccatttcggactgttgtcggaagccttatacacccgtgc 4145
Query: 287 attttattattttcaatgcgcctataaccgaataatagtttaatttttcctttccttcaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4146 attttattattttcaatgcgcctataaccgaataatagtttaatttttcctttccttcaa 4205
Query: 347 gtttcctgattaggaaacccatccaacgtttttcagactttgggctgagttttctccgtg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4206 gtttcctgattaggaaacccatccaacgtttttcagactttgggctgagttttctccgtg 4265
Query: 407 cctaaggaaagacagggcattaggtgtgccgacgcctcggttctttccagtttctcctcc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4266 cctaaggaaagacagggcattaggtgtgccgacgcctcggttctttccagtttctcctcc 4325
Query: 467 ccgacagaatttccatccccctgattctgcttctcctaccgacaccttctgctcctangc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4326 ccgacagaatttccatccccctgattctgcttctcctaccgacaccttctgctcctaggc 4385
Query: 527 tgggaacatgcaccactagaccgatcttgctcagtgacagagtatgctgggcctctgtcc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4386 tgggaacatgcaccactagaccgatcttgctcagtgacagagtatgctgggcctctgtcc 4445
Query: 587 agttctggtttgtgcgggtgtgagacaatcgttctatantgg-tttaccgaatgggcagt 645
||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| |||
Sbjct: 4446 agttctggtttgtgcggttgtgagacaatcgttctatagtggttttaccgaatggcaagt 4505
Query: 646 ttgtatggaaggaaacttttga--ccttgcaaaatcata-tgttcaat 690
||||||||| |||||| ||||| | ||||||||||||| ||||||||
Sbjct: 4506 ttgtatggagggaaacctttgaacctttgcaaaatcatagtgttcaat 4553
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7074
Number of Sequences: 1807
Number of extensions: 7074
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)