BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA08FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1789 1306 0.0
>3x_Contig1789
Length = 30977
Score = 1306 bits (659), Expect = 0.0
Identities = 724/740 (97%), Gaps = 5/740 (0%)
Strand = Plus / Minus
Query: 84 aaacgactggtatcaacactgtgagagacaatagattgaaccgtaggcatcttttgcaac 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28691 aaacgactggtatcaacactgtgagagacaatagattgaaccgtaggcatcttttgcaac 28632
Query: 144 gtcttttattaatcaaagccagtgtttccttctttgatttaagaatttttctttcaatac 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28631 gtcttttattaatcaaagccagtgtttccttctttgatttaagaatttttctttcaatac 28572
Query: 204 ttattacatttggtatatattgattctttactgataacgttaatacaaaactgagaagag 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28571 ttattacatttggtatatattgattctttactgataacgttaatacaaaactgagaagag 28512
Query: 264 aaaaagcacaaaaaattcgtatcaaaacccatcaagggctttagtagctctttcaagtct 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28511 aaaaagcacaaaaaattcgtatcaaaacccatcaagggctttagtagctctttcaagtct 28452
Query: 324 tcttaaaccttcttggtacttttctggatccagaaccatatctgcagtcaatctagagag 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28451 tcttaaaccttcttggtacttttctggatccagaaccatatctgcagtcaatctagagag 28392
Query: 384 agaatcgaccaatctttcaagagctcttttctcttcgatcttcataccaaggttagagaa 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28391 agaatcgaccaatctttcaagagctcttttctcttcgatcttcataccaaggttagagaa 28332
Query: 444 ttctgaccctatcagggttccctttgtaacattcaatagttgtgagatagtatctatatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28331 ttctgaccctatcagggttccctttgtaacattcaatagttgtgagatagtatctatatc 28272
Query: 504 gaaggatcttagttctttgttgtgtttggatccgatttttttggtttgattgtggctttg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28271 gaaggatcttagttctttgttgtgtttggatccgatttttttggtttgattgtggctttg 28212
Query: 564 gttttggccttgacgttggtgagatttggatctggtcttcgaatggcctttctttggagc 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 28211 gttttggccttgacgttggtgagatttggatctggtcttcgaatggcctttcttgggagc 28152
Query: 624 ctttggcagcttactttgtggagtccttactgatgangcagctttagtggaatcagcacc 683
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 28151 ctttggcagcttactttgtggagtccttactgatgaggcagctttagtggaatcagca-c 28093
Query: 684 ctttctctactatgtcctcggaatcatcatcatcttctggatcttttacattgcacactg 743
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 28092 ctttctctactatgtcctcgtaatcatcatcatcttctggatcttttacattgcacactg 28033
Query: 744 nnctggtcattcggntgtttgtgggatttgggtcttttgggttttcaatcttgacgatga 803
|||||||||||| || ||||| ||||||| ||| | |||| | ||||||||||||||
Sbjct: 28032 -cctggtcattcggttg-ttgtgtgatttggttctctggggtctccaatcttgacgatg- 27976
Query: 804 atgagctttggaatagaagg 823
|||||| |||||||||||||
Sbjct: 27975 atgagc-ttggaatagaagg 27957
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7740
Number of Sequences: 1807
Number of extensions: 7740
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)