BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA08RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1746 1628 0.0
>3x_Contig1746
Length = 26672
Score = 1628 bits (821), Expect = 0.0
Identities = 856/864 (99%), Gaps = 3/864 (0%)
Strand = Plus / Minus
Query: 49 taagaacttataggcatgctccaaatactggttccaggaaatcttgggctgccggtgacg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22227 taagaacttataggcatgctccaaatactggttccaggaaatcttgggctgccggtgacg 22168
Query: 109 cagtggcaagagctgtcaacattgcatatttggtgaagaatggaagtccaggtacaattc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22167 cagtggcaagagctgtcaacattgcatatttggtgaagaatggaagtccaggtacaattc 22108
Query: 169 cttccgtactaaccgctaagacatggggtttttatgacgttcttttcaaaggtaaaccat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22107 cttccgtactaaccgctaagacatggggtttttatgacgttcttttcaaaggtaaaccat 22048
Query: 229 tcaccttccagcaaagggacactttcggttcttatgtgatggaaaacgttcttttcaaga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22047 tcaccttccagcaaagggacactttcggttcttatgtgatggaaaacgttcttttcaaga 21988
Query: 289 tatcgttcccagcagaattccatgctcaaacggcagtggaagcagctattaaggtgaata 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21987 tatcgttcccagcagaattccatgctcaaacggcagtggaagcagctattaaggtgaata 21928
Query: 349 aacagttggcagagttgggcaaaacttacaaagacattaaaaaggtcagaattagaactc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21927 aacagttggcagagttgggcaaaacttacaaagacattaaaaaggtcagaattagaactc 21868
Query: 409 aagaagccgctgtgagaattattgacaaggagggtccattgtacaattatgctgacagag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21867 aagaagccgctgtgagaattattgacaaggagggtccattgtacaattatgctgacagag 21808
Query: 469 atcattgtattcaatacatgactgctattccattaatttacggtagactaacggctgacg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21807 atcattgtattcaatacatgactgctattccattaatttacggtagactaacggctgacg 21748
Query: 529 attacagtgatgaagtagcaagcaaccctgaaattgacgaattgagagctaagatgtatt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21747 attacagtgatgaagtagcaagcaaccctgaaattgacgaattgagagctaagatgtatt 21688
Query: 589 gtactaaagatgaccaattcactttggattatcatgatccatcaaagagatcaatcccaa 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21687 gtactaaagatgaccaattcactttggattatcatgatccatcaaagagatcaatcccaa 21628
Query: 649 acgctttgttagtagaattgaatgatgggactgtcttagatgaagtggtcgtagaatatc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21627 acgctttgttagtagaattgaatgatgggactgtcttagatgaagtggtcgtagaatatc 21568
Query: 709 caatcggtcacagactaagaagaaaggaaggtgtcccactattgatgcagaaattctacc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21567 caatcggtcacagactaagaagaaaggaaggtgtcccactattgatgcagaaattctacc 21508
Query: 769 accatttgcgtgaacatttcgccggcgatattg-aaaggtggaagcttt-atggaagc-a 825
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct: 21507 accatttgcgtgaacatttcgccggcgatattgaaaaggtggaagctttaatggaagcaa 21448
Query: 826 gtacagatgaccgtttcttaaacttaactgttgatgaatatgntcacatgtactgcgatt 885
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 21447 gtacagatgacggtttcttaaacttaactgttgatgaatatgtcaacatgtactgcgatt 21388
Query: 886 aagctttgttcttcgcacagcatc 909
||||||||| ||||||||||||||
Sbjct: 21387 aagctttgtccttcgcacagcatc 21364
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5944
Number of Sequences: 1807
Number of extensions: 5944
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)