BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA09FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 716 0.0
>3x_Contig1590
Length = 13653
Score = 716 bits (361), Expect = 0.0
Identities = 368/369 (99%), Gaps = 1/369 (0%)
Strand = Plus / Plus
Query: 90 ggtttaaaattgtgcacccaataacaattgatgccacggtgattaaagtgatataatcag 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13286 ggtttaaaattgtgcacccaataacaattgatgccacggtgattaaagtgatataatcag 13345
Query: 150 ttggtttaaacttgtcaaagtttttgaaacccaagaatgttgtgactaatggcttggaat 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13346 ttggtttaaacttgtcaaagtttttgaaacccaagaatgttgtgactaatggcttggaat 13405
Query: 210 agttatctaattgtttgaccatcttatcatcaattgattcctcttcgtcggatgaatcag 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13406 agttatctaattgtttgaccatcttatcatcaattgattcctcttcgtcggatgaatcag 13465
Query: 270 atccatagatgcgttcgatatgaggagtttccacatacttcaaaaacaagaattgcaaac 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13466 atccatagatgcgttcgatatgaggagtttccacatacttcaaaaacaagaattgcaaac 13525
Query: 330 agtgaccaagaatggaaacgaaaagaacatgatgatcgccggagattaaactcaacccat 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13526 agtgaccaagaatggaaacgaaaagaacatgatgatcgccggagattaaactcaacccat 13585
Query: 390 agtagccaatgtaaccgatagaatacatgggatgtgggaaaacgttgaaaacaccatcaa 449
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 13586 agtagccaatgtaaccgatagaatacatgggatgtgggaaaacgtt-aaaacaccatcaa 13644
Query: 450 agacaaggt 458
|||||||||
Sbjct: 13645 agacaaggt 13653
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8669
Number of Sequences: 1807
Number of extensions: 8669
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)