BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZA09RM1.SCF screened BAC_end
         (947 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1539                                                        1328   0.0  

>3x_Contig1539 
          Length = 11016

 Score = 1328 bits (670), Expect = 0.0
 Identities = 818/854 (95%), Gaps = 10/854 (1%)
 Strand = Plus / Plus

                                                                        
Query: 48   cttcttcttacaataagtcttcccattattcttattaccagattgaagacttttctttgc 107
            |||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 8585 cttcttcttcaaataagtcttcgcattattcttattaccagattgaagacttttctttgc 8644

                                                                        
Query: 108  aagttgttgctgctgatctatctgtgtttgcaaatgcgcctgtttcttattcaatagttg 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8645 aagttgttgctgctgatctatctgtgtttgcaaatgcgcctgtttcttattcaatagttg 8704

                                                                        
Query: 168  gatatgttctctaaggtcgacaatcgccttcttaggcagttctttctgttgtttggaagt 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8705 gatatgttctctaaggtcgacaatcgccttcttaggcagttctttctgttgtttggaagt 8764

                                                                        
Query: 228  tccgaagaaatagccccacatgatgtgtctaatgtattcccgtcaaatctgagcctaatg 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8765 tccgaagaaatagccccacatgatgtgtctaatgtattcccgtcaaatctgagcctaatg 8824

                                                                        
Query: 288  ccacagggtttaaaaaaatagaagatgttaaaattatacctgagattgccaggtgagtct 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8825 ccacagggtttaaaaaaatagaagatgttaaaattatacctgagattgccaggtgagtct 8884

                                                                        
Query: 348  atgaatatgagcccagcgcctcagtctatctttgatagtagctgttcttctttcttactt 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8885 atgaatatgagcccagcgcctcagtctatctttgatagtagctgttcttctttcttactt 8944

                                                                        
Query: 408  attgttaatccaatattgttcagttttttatccgttttaatttcacaatttcagatagga 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8945 attgttaatccaatattgttcagttttttatccgttttaatttcacaatttcagatagga 9004

                                                                        
Query: 468  taatcttttttggggggggggngggagactacggcggcgaacgggggagatgtgaaactt 527
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 9005 taatcttttttgggggggggg-gggagactacggcggcgaacgggggagatgtgaaactt 9063

                                                                        
Query: 528  cattacccgaatttgaacattccagttccatatcacgtgatttatattgatcacgtgata 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9064 cattacccgaatttgaacattccagttccatatcacgtgatttatattgatcacgtgata 9123

                                                                        
Query: 588  gatcttttttcacattgtagtttctttttctcgccaaaccagagaaactcactatgcccc 647
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 9124 gatcttttttcacattgtagtttcttcttctcgccaaaccagagaaactcactatgcccc 9183

                                                                        
Query: 648  acctagtcaaaaaggatgagttcattttactccgaacggaccttttcacgatccaagcag 707
            |||||||||||| |||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct: 9184 acctagtcaaaagggatgagttcatatcactccgaacggacctttccacgatccaagcag 9243

                                                                        
Query: 708  agcagttaccggcggggtagcacccggactaaagcagcaaggaatgccttccttaccgtg 767
            |||||||||| ||||||||||| ||||||||||||||| ||||||| | ||| |||||||
Sbjct: 9244 agcagttacc-gcggggtagca-ccggactaaagcagc-aggaatggc-tccataccgtg 9299

                                                                        
Query: 768  agcaatgtttatactacctatcctttggggccattatttaactgctaactgcatttgggc 827
            |||||||| |||||||| ||  | ||||||||||||| |||||||||||||||| | || 
Sbjct: 9300 agcaatgtatatactacata-gcattggggccattatctaactgctaactgcatct-ggt 9357

                                                                        
Query: 828  cctggatgaggtatcagtccccgattccaaagattcc-ctttggcttttcgctt-aatgc 885
            ||||||||||  ||||||| | ||| | ||||||||| || |||| | |||||| |||||
Sbjct: 9358 cctggatgagtaatcagtcacagatccaaaagattccactatggc-tctcgcttcaatgc 9416

                          
Query: 886  taaaacatgctctt 899
            |||| |||||||||
Sbjct: 9417 taaatcatgctctt 9430


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8464
Number of Sequences: 1807
Number of extensions: 8464
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)