BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA10FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1382 0.0
>3x_Contig1795
Length = 38452
Score = 1382 bits (697), Expect = 0.0
Identities = 788/812 (97%), Gaps = 6/812 (0%)
Strand = Plus / Plus
Query: 88 tgactgtttgcacccatgcacccatgaatattttataatcactctactatcctttttaat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5891 tgactgtttgcacccatgcacccatgaatattttataatcactctactatcctttttaat 5950
Query: 148 tttcttcattcccaaaacaggaattttactctcaagtttcctgtgaaaatgatggccata 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5951 tttcttcattcccaaaacaggaattttactctcaagtttcctgtgaaaatgatggccata 6010
Query: 208 ctactggcatccattttcccgtttgcagctggggagtttcctgcctggccgcaaccacac 267
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6011 ctactggcagccattttcccgtttgcagctggggagtttcctgcctggccgcaaccacac 6070
Query: 268 cagacaggacgctccccgtttggtccaacacttcgagcgtagagacccgctcggttttgg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6071 cagacaggacgctccccgtttggtccaacacttcgagcgtagagacccgctcggttttgg 6130
Query: 328 tcttactcattgtccagctgaaccttcctctcccctcggtgtctctgtttccctttgacg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6131 tcttactcattgtccagctgaaccttcctctcccctcggtgtctctgtttccctttgacg 6190
Query: 388 gcaaggaggtgtgtctgtgtttcatcctgagcgtatctccctctcccgtatgctaggcta 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6191 gcaaggaggtgtgtctgtgtttcatcctgagcgtatctccctctcccgtatgctaggcta 6250
Query: 448 ggctaggctaggtccactctgcaaccactcagggctggcctgccggaatctccttcactg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6251 ggctaggctaggtccactctgcaaccactcagggctggcctgccggaatctccttcactg 6310
Query: 508 ggaaattctgaccggtccctcgatcgctccttctctcactagtagtttgtgttggaatcg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6311 ggaaattctgaccggtccctcgatcgctccttctctcactagtagtttgtgttggaatcg 6370
Query: 568 aagtttcgattcatttcactaaacaaaaaagtattgaaattcggtatatgaatgtaaagt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371 aagtttcgattcatttcactaaacaaaaaagtattgaaattcggtatatgaatgtaaagt 6430
Query: 628 aacatttgtattctatataatcatatagcaagaacatcaagcacacagatatatcaacaa 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6431 aacatttgtattctatataatcatatagcaagaacatcaagcacacagatatatcaacaa 6490
Query: 688 gatggctcaagtatgtgggaaacaagtgctatattcataccctgnnagaattacgaaaga 747
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 6491 gatggctcaagtatgtgggaaacaagtgctatatccataccctggagaaattacgaaaga 6550
Query: 748 aaaagattgactcagcgatcatgacgacgnaatat-gtnattgncgacatctattggc-a 805
||| ||||||||||||||||||||||||| ||||| || |||| |||||||||||||| |
Sbjct: 6551 aaaggattgactcagcgatcatgacgacgaaatatagtaattggcgacatctattggcaa 6610
Query: 806 tataaaattgtatgaaatgatttaaca-cattgcataaatgagaacagtcttggaccaaa 864
||||||| |||| ||||| |||||| ||| |||||||||||||||||| ||||||| |
Sbjct: 6611 tataaaa-tgtaatgaatgaattaacaccatagcataaatgagaacagtc-tggaccaga 6668
Query: 865 tgctggttcgattccaataatgtacaggtggg 896
|||| ||||||||||| ||||||||| |||||
Sbjct: 6669 tgct-gttcgattccagtaatgtacaagtggg 6699
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5118
Number of Sequences: 1807
Number of extensions: 5118
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)