BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA10RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1075 1548 0.0
>3x_Contig1075
Length = 3835
Score = 1548 bits (781), Expect = 0.0
Identities = 844/859 (98%), Gaps = 5/859 (0%)
Strand = Plus / Plus
Query: 45 cagataacgatcaagattttagagatagattagggcacatgttttctgagaatatattac 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 cagataacgatcaagattttagagatagattagggcacatgttttctgagaatatattac 959
Query: 105 aacttactattccaagaatcggattagactaccctgggctctctttgtggattcttggct 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 aacttactattccaagaatcggattagactaccctgggctctctttgtggattcttggct 1019
Query: 165 attgtcaagatgttgttctgatgttggggaaagaaacaacattatatttacagcgtgtga 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 attgtcaagatgttgttctgatgttggggaaagaaacaacattatatttacagcgtgtga 1079
Query: 225 tatacgttcttggggaattctatttcaggaatgcgttcatgacattacaaatgccaattt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 tatacgttcttggggaattctatttcaggaatgcgttcatgacattacaaatgccaattt 1139
Query: 285 tacataagtgtcttgatctattgatattactctgtgatcaatgtattccagagagtatag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 tacataagtgtcttgatctattgatattactctgtgatcaatgtattccagagagtatag 1199
Query: 345 tcaatcaaaggtatgatatcctagcttgcattctactatgctatgaaaaatgttacaacg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 tcaatcaaaggtatgatatcctagcttgcattctactatgctatgaaaaatgttacaacg 1259
Query: 405 agggatctttaacagcagatgtcttagacaaatgtaaagtattattagctaaactcgaat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 agggatctttaacagcagatgtcttagacaaatgtaaagtattattagctaaactcgaat 1319
Query: 465 cattcggatgtgatttcaaagaagaatcaaagaaactgaaggagcgtaaatctcttacta 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 cattcggatgtgatttcaaagaagaatcaaagaaactgaaggagcgtaaatctcttacta 1379
Query: 525 atttatttgcataaatacctatctaattcatcacataaagaaaaatactaaccctgtaac 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 atttatttgcataaatacctatctaattcatcacataaagaaaaatactaaccctgtaac 1439
Query: 585 ttagcaatccgaaaataaaacgaaccaggggcggngctcactgatatatgtacaagaagt 644
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1440 ttagcaatccgaaaataaaacgaaccaggggcggggctcactgatatatgtacaagaagt 1499
Query: 645 ggagtcacacaacgagctttacaggttcaggtttagcangcgctacattttcttttcaca 704
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1500 ggagtcacacaacgagctttacaggttcaggtttagcaggcgctacattttcttttcaca 1559
Query: 705 tcgcggagtgaaattattgaatagattgcaaaccttttacaattctgatatttgtgtccc 764
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1560 tcgcggagtgaaattattgaatagattgcaaacccttaacaattctgatatttgtgtcca 1619
Query: 765 aaaatctgttaacacagttgtttaagcattgttcttcttgagaagacaaa-cagcatttt 823
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||
Sbjct: 1620 aaaatctgttaacacagttgtttaggcattgttcttcttgagaagacaaatcagca-ttt 1678
Query: 824 tgaacgttgctaatacagttttttgaaacaaaaattggggaactgatgaatagaactttt 883
|||||||||||||||||| ||||||||||||| ||||| |||||||||||||| || | |
Sbjct: 1679 tgaacgttgctaatacag-tttttgaaacaaagattggtgaactgatgaatag-acatct 1736
Query: 884 gtacctttttgcttggaat 902
||| |||||||||||||||
Sbjct: 1737 gta-ctttttgcttggaat 1754
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7619
Number of Sequences: 1807
Number of extensions: 7619
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)