BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA11RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig820 1205 0.0
>3x_Contig820
Length = 1802
Score = 1205 bits (608), Expect = 0.0
Identities = 647/659 (98%), Gaps = 1/659 (0%)
Strand = Plus / Plus
Query: 48 tggattaagtctattatgtatgacgctctcaaacaccaattaattatagatactgtggaa 107
|||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 1145 tggattaagtctattaggtatgacgcttttaaacaccaattaattatagatactgtggaa 1204
Query: 108 tggataggtaaagttcaatcgaaagatggcgatactgacgataaaacaaatgattcgcaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 tggataggtaaagttcaatcgaaagatggcgatactgacgataaaacaaatgattcgcaa 1264
Query: 168 cagttacacggtccatcggaagaagacctgaaggacgaaacttgtaaattactatcgagg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 cagttacacggtccatcggaagaagacctgaaggacgaaacttgtaaattactatcgagg 1324
Query: 228 actttgacgagatatttaccgtttatgtccaaatggcttgacagggtaaagattttaatc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 actttgacgagatatttaccgtttatgtccaaatggcttgacagggtaaagattttaatc 1384
Query: 288 gatgggattaaaattggtgacattttcatcaactttaccttgataaagatattctccgag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1385 gatgggattaaaattggtgacattttcatcaactttaccttgataaagatattctccgag 1444
Query: 348 ggcaatgagttcgcgtttgaagtgaaccttcaaagtgtcatgttaaaggagaagcagatg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445 ggcaatgagttcgcgtttgaagtgaaccttcaaagtgtcatgttaaaggagaagcagatg 1504
Query: 408 gtcgcaaacacaattttcaagtcagatgccatgatggatttagagagacctttcccactt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1505 gtcgcaaacacaattttcaagtcagatgccatgatggatttagagagacctttcccactt 1564
Query: 468 aacgacattaatatcaatttgaagatgagagagatgaccgtaccggtaagttccttcatc 527
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1565 aacgacattaatatcaatttggagatgagagagatgaccgtaccggtaagttccttcatc 1624
Query: 528 atagccgtgtatcagttaaggcatgggaaaataccagaccaattggacaaagttaaaaaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1625 atagccgtgtatcagttaaggcatgggaaaataccagaccaattggacaaagttaaaaaa 1684
Query: 588 gatccattgtatgaaggactgccaccaataaaatcaccagaaagcacaatacacgacgaa 647
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1685 aatccattgtatgaaagactgccaccaataaaatcaccagaaagcacaatacacgacgag 1744
Query: 648 gaatttcctagtgaatggaacattgagcangtaatggaaaagtttcagaaagagtttga 706
|||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||
Sbjct: 1745 gaatttcctagtgaatggaa-aatgagcaggtaatggaaaagtttcagaagaagtttga 1802
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7746
Number of Sequences: 1807
Number of extensions: 7746
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)