BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZA12FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1527 1368 0.0
>3x_Contig1527
Length = 8131
Score = 1368 bits (690), Expect = 0.0
Identities = 785/809 (97%), Gaps = 6/809 (0%)
Strand = Plus / Plus
Query: 86 tggttcgatacgggatacttatcatttatgtgtcaatttggttcagcattgtgtcatcca 145
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6960 tggtacgatacgggatacttatcatttatgtgtcaatttggttcagcattgtgtcatcca 7019
Query: 146 tactttttccttatctacttcgcgctccagtattcagtcaaaatggaagtggagaagaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7020 tactttttccttatctacttcgcgctccagtattcagtcaaaatggaagtggagaagaca 7079
Query: 206 tcactatcatgcttttgacgtgtacacaatcattgaaaagctggaaaggagaaaataatg 265
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7080 tcactatcatgcctttgacgtgtacacaatcattgaaaagctggaaaggagaaaataatg 7139
Query: 266 cctgtggaactaatgcagagttttgtacaactactgacaatgactttttcgtaagatgtc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7140 cctgtggaactaatgcagagttttgtacaactactgacaatgactttttcgtaagatgtc 7199
Query: 326 cagcgttatgcgatcgagcatggatttattcggcacagacggtcggtaatcaaagagtta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7200 cagcgttatgcgatcgagcatggatttattcggcacagacggtcggtaatcaaagagtta 7259
Query: 386 aatatagagaattcaacattggaggtggtccaacgaaagataatgccattttatcccacc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7260 aatatagagaattcaacattggaggtggtccaacgaaagataatgccattttatcccacc 7319
Query: 446 cttatcgtggtgattctgccatatgttccagtgcgtatcattcaggtttaatatccggtt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7320 cttatcgtggtgattctgccatatgttccagtgcgtatcattcaggtttaatatccggtt 7379
Query: 506 tatctgggggatgtgttcgagtatcaagccaaggacctcaagctaaattcctcagtgtta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7380 tatctgggggatgtgttcgagtatcaagccaaggacctcaagctaaattcctcagtgtta 7439
Query: 566 atgggaaatctggattgtctgtaggttttgattcgttcttccctctatcatttgctttca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7440 atgggaaatctggattgtctgtaggttttgattcgttcttccctctatcatttgctttca 7499
Query: 626 cagaaatgcaggatggaatagcaagtggatgctatgacccgagatcgttggtaatggcct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7500 cagaaatgcaggatggaatagcaagtggatgctatgacccgagatcgttggtaatggcct 7559
Query: 686 tgaatattgngttttctctgcctatcttttttctttacgaagcggtgattggggtattgg 745
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7560 tgaatattgtgttttctctgcctatcttttttctttacgaagcggtgatt-gggtattgg 7618
Query: 746 accgttacttttgcaggttttttggactttactactggtttttcgacccaccaatgctta 805
||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||||| |
Sbjct: 7619 accgttactttggcagg-tttttggactttactact-gattttcgacccaccaatgctca 7676
Query: 806 caaattcaacagtactttactccggttgcgtgattgattaatgttgggatttgaaaaggt 865
|| || |||||| | ||||| ||||||| |||||||| || ||||||||| ||||||
Sbjct: 7677 cagatccaacag-atcttactacggttgctgaattgattagtg-tgggatttg-aaaggt 7733
Query: 866 accttcccctttcatttattctatttgtt 894
|||||||||||||||||||||| ||||
Sbjct: 7734 tacttcccctttcatttattctatatgtt 7762
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5858
Number of Sequences: 1807
Number of extensions: 5858
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)