BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZA12RM1.SCF screened BAC_end
         (975 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1751                                                        1211   0.0  

>3x_Contig1751 
          Length = 24682

 Score = 1211 bits (611), Expect = 0.0
 Identities = 643/650 (98%), Gaps = 3/650 (0%)
 Strand = Plus / Minus

                                                                         
Query: 79    gttaacacgtctgctaacatgcagcattgtacaaacgaaggtattactagaagtcacatc 138
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20811 gttaacacgtctgcaaacatgcagcattgtacaaacgaaggtattactagaagtcacatc 20752

                                                                         
Query: 139   ctaccaactatatagaatcatacttagacttgcaacgattatgttaagcaactattatgt 198
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20751 ctaccaactatatagaatcatacttagacttgcaacgattatgttaagcaactattatgt 20692

                                                                         
Query: 199   gtgtcttgctactaatttcccaagtggaatcattaaaacaaataaatatattattaacgg 258
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20691 gtttcttgctactaatttcccaagtggaatcattaaaacaaataaatatattattaacgg 20632

                                                                         
Query: 259   actttcaaaagagtaaagatataggactcgttaataacaatacgatataagattaaacgt 318
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20631 actttcaaaagagtaaagatataggactcgttaataacaatacgatataagattaaacgt 20572

                                                                         
Query: 319   ttctatcatttatatgtctaccctattcttgctcttcttcttcgtcactttctagagcag 378
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20571 ttctatcatttatatgtctaccctattcttgctcttcttcttcgtcactttctagagcag 20512

                                                                         
Query: 379   caaatgcattgaaagcctttgaaggcttgtctgcgacgatatccctcgcatcagctggtc 438
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20511 caaatgcattgaaagcctttgaaggcttgtctgcgacgatatccctcgcatcagctggtc 20452

                                                                         
Query: 439   ttgaggatgaaatgtgtttgtttggcttcaccttcaatgtttcttgagcgatgacaatgg 498
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20451 ttgaggatgaaatgtgtttgtttggcttcaccttcaatgtttcttgagcgatgacaatgg 20392

                                                                         
Query: 499   ttggttcttcttcttcagccacagactttcttctgaccgctggagcagtttctagtgtag 558
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20391 ttggttcttcttcttcagccacagactttcttctgaccgctggagcagtttctagtgtag 20332

                                                                         
Query: 559   accatccttcctcatcggtagtaatttttggtttcaaatgcttgaattttggtttagcat 618
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20331 accatccttcctcatcggtagtaatttttggtttcaaatgcttgaattttggtttagcat 20272

                                                                         
Query: 619   ggtggtgagaagatcttcttctgaagtgagaanattcttcttcatgtgcttcttggattt 678
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 20271 ggtggtgagaagatcttcttctgaagtgagaaaattcttcttcatgtgcttcttggattt 20212

                                                               
Query: 679   cttttcactttttcaanttatagcgtggaattcatcaacngtcgaagttt 728
             | |||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct: 20211 c-tttcactttttcaa-ttatagcgttgaattcatcaac-gtcgaagttt 20165


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9578
Number of Sequences: 1807
Number of extensions: 9578
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)