BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB01FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1337 1534 0.0
>3x_Contig1337
Length = 7771
Score = 1534 bits (774), Expect = 0.0
Identities = 807/814 (99%), Gaps = 3/814 (0%)
Strand = Plus / Minus
Query: 89 catctggtgataccaacggtatgattaaagtctgggatttagttaaacgtaattgtcaat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7670 catctggtgataccaacggtatgattaaagtctgggatttagttaaacgtaattgtcaat 7611
Query: 149 gcactattcaggaacatactacagctgttagagggctagatttccgtgtcactgatgaag 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7610 gcactattcaggaacatactacagctgttagagggctagatttccgtgtcactgatgaag 7551
Query: 209 aaaagggaacgctgcagttattatctggtggtagagacaatatcttaaatctcttcgagt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7550 aaaagggaacgctgcagttattatctggtggtagagacaatatcttaaatctcttcgagt 7491
Query: 269 ttaattcgacgaaaaagtataagctactgaagaccatccctgtcatagaacaggtggaat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7490 ttaattcgacgaaaaagtataagctactgaagaccatccctgtcatagaacaggtggaat 7431
Query: 329 cgtgtggatttacgcaggacccggatgtggtttactcagccggtggtggtgccatttacc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7430 cgtgtggatttacgcaggacccggatgtggtttactcagccggtggtggtgccatttacc 7371
Query: 389 aattagtgtccttgtcaacaggaagagtattaaagaaaacagcaaaacctattgaagagc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7370 aattagtgtccttgtcaacaggaagagtattaaagaaaacagcaaaacctattgaagagc 7311
Query: 449 tatttattattggtacactatgtatcctgaacggaactaagcagtacttggtattttcag 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7310 tatttattattggtacactatgtatcctgaacggaactaagcagtacttggtattttcag 7251
Query: 509 atcaaactttgttcctaatagatgttgaatcagctttacaatcggaatctgaagtaattg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7250 atcaaactttgttcctaatagatgttgaatcagctttacaatcggaatctgaagtaattg 7191
Query: 569 aagtggaaaataagattgcaggtaatcatggtaccattgcagatataagattcgttggtc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7190 aagtggaaaataagattgcaggtaatcatggtaccattgcagatataagattcgttggtc 7131
Query: 629 caaaacgggataaattagcattagctactaactctcctactcttagaataattccaaccc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7130 caaaacgggataaattagcattagctactaactctcctactcttagaataattccaaccc 7071
Query: 689 caacttcttcggaggaagagttcgaaaatggggagaacaaagaaacatttcctatttgag 748
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7070 caacttcttcggaggaagagttcgaaaatggggagaacaaagaaacatttcctattgaag 7011
Query: 749 taaagatgtacgaaggtcatacggatctactcaactctttggatgccaccgctgatggtc 808
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7010 taaagatgtacgagggtcatacggatctactcaactctttggatgccaccgctgatggtc 6951
Query: 809 tctgggttgctacagcatccaaggatcacagcgttatattattggaaatatcatgcaaag 868
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 6950 tctgggttgctacagcatccaaggatcacagcgttatatta-tggagatatcatgcaaag 6892
Query: 869 tacgaaagactttt-tccatacactaaatttgtc 901
|||| ||||||||| |||||||||||||||||||
Sbjct: 6891 tacg-aagacttttatccatacactaaatttgtc 6859
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5920
Number of Sequences: 1807
Number of extensions: 5920
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)