BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB01RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig532 1554 0.0
>3x_Contig532
Length = 2251
Score = 1554 bits (784), Expect = 0.0
Identities = 834/846 (98%), Gaps = 5/846 (0%)
Strand = Plus / Plus
Query: 47 agtttctcctatatcagatatggcagcagcaggaagaggcaggaagagctcgagggtttc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31 agtttctcctatatcagatatggcagcagcaggaagaggcaggaagagctcgagggtttc 90
Query: 107 tcgctcagctaacaaagcaaccagctataaaatcgatacagacgagttagacattgaaga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 tcgctcagctaacaaagcaaccagctataaaatcgatacagacgagttagacattgaaga 150
Query: 167 tgatgaaaaggatcaagagtaccctggaccagccaatgatgatgattacgatgatgaccc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tgatgaaaaggatcaagagtaccctggaccagccaatgatgatgattacgatgatgaccc 210
Query: 227 agatgctgatatcgaaaacgagggtaaaccatctcgttccaagcgcaaggccgcttcgag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 agatgctgatatcgaaaacgagggtaaaccatctcgttccaagcgcaaggccgcttcgag 270
Query: 287 cacacctgttccagtggtactagcgacaagaggaaggccttcaaagaggaaaagagaaga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cacacctgttccagtggtactagcgacaagaggaaggccttcaaagaggaaaagagaaga 330
Query: 347 agatttgaacgatcccttaagacagaaactaccgtacccagtggacgaaaacgggtctcc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agatttgaacgatcccttaagacagaaactaccgtacccagtggacgaaaacgggtctcc 390
Query: 407 atacccaattgtgaatgacgagtattcattacctgaggatccagagggtgaaaccaagat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atacccaattgtgaatgacgagtattcattacctgaggatccagagggtgaaaccaagat 450
Query: 467 caccaagaatggtgatcttctagagggaagacaatttgtagtcagaactttcacggtacc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 caccaagaatggtgatcttctagagggaagacaatttgtagtcagaactttcacggtacc 510
Query: 527 ttccagaggtgaagttaaatacatgctttctactgagccagcccgtgccgttgggttcag 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttccagaggtgaagttaaatacatgctttctactgagccagcccgtgccgttgggttcag 570
Query: 587 agactcatacttgttcttccagtaccatccaaacctatacaaattgattatctcgcaatc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 agactcatacttgttcttccagtaccatccaaacctatacaaattgattatctcgcaatc 630
Query: 647 agagagagacgatctcatcaaaaatggtgtattgccctattcgtacagaaacagaatcat 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agagagagacgatctcatcaaaaatggtgtattgccctattcgtacagaaacagaatcat 690
Query: 707 tgcgctagttactggcaggagtgtgttccgagaattcggagccaaggttgttgtagatgg 766
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgcgctagttactgcaaggagtgtgttccgagaattcggagccaaggttgttgtagatgg 750
Query: 767 taaaaacatcacggatgattattacgccggtaagcttcgtgcattcgggaaggggtgaaa 826
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 751 taaaaacatcacggatgattattacgccggtaagcttcgtgcatccgggaa--ggtgaaa 808
Query: 827 ga-ggtaccccancaaggagaacatcacacacaagtgtcacttggaagaaataccccttg 885
|| ||||||||| |||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 809 gagggtaccccagcaagagaaacatcacacacaagtgtcac-tggaagaaata-cccttg 866
Query: 886 gaatag 891
||||||
Sbjct: 867 gaatag 872
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6069
Number of Sequences: 1807
Number of extensions: 6069
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)