BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB02FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1213 0.0
>3x_Contig1785
Length = 37935
Score = 1213 bits (612), Expect = 0.0
Identities = 741/776 (95%), Gaps = 6/776 (0%)
Strand = Plus / Minus
Query: 118 acccaaataaagtaatgtgctagccaacgttaaagtagtgagaaatagaagagta-cata 176
||||||||||| ||| |||||||||||| ||| |||||| ||||||||||||||| ||||
Sbjct: 32295 acccaaataaactaaagtgctagccaac-ttagagtagttagaaatagaagagtaacata 32237
Query: 177 atttggccgattcgtaatcattatgctgggataacttatcaccaacttattgtacgttag 236
||||||| | || ||||||||||||||||||||||||||||||||||| || || |||||
Sbjct: 32236 atttggcagctttgtaatcattatgctgggataacttatcaccaacttcttctaggttag 32177
Query: 237 caacggtagagactgacaacaagttttcaatttcattcaacttactcaattcagcgtatg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32176 caacggtagagactgacaacaagttttcaatttcattcaacttactcaattcagcgtatg 32117
Query: 297 ccaagattaatgctccgtagat-accggttccttcaaagattctctagccatcaacaaat 355
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 32116 ccaagattaatgctccgtcgattaccggttccttcaaagattctctagccatcaacaaat 32057
Query: 356 atgggacaagctcttcaaatttaccagcgtcttcggcagccttgataacgttcatgaagt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32056 atgggacaagctcttcaaatttaccagcgtcttcggcagccttgataacgttcatgaagt 31997
Query: 416 tcgaaggatctttacccttgatgtaagagtcaatagcttctgggatacgtaatgcattta 475
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31996 tcgaaggatctttagccttgatgtaagagtcaatagcttctgggatacgtaatgcattta 31937
Query: 476 attctgcagtaccaagttgagaccatagctctggtgtgttgattttgtcggcatatgatt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31936 attctgcagtaccaagttgagaccatagctctggtgtgttgattttgtcggcatatgatt 31877
Query: 536 ctgctctgtctaacatcaaaagatcttcgactataactttcaatgctttgtcatgtatcc 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 31876 ctgctctgtctaacatcaaaagatcttcgactataactttcaatgctttgtcatgtttcc 31817
Query: 596 catgtgtatcataaatttccaaggcttattcatttaattcattttcaatacacaatggtg 655
||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 31816 catgtttatcataaatttcgaaggcttcttcatttaattcattttcaatacacaatggtg 31757
Query: 656 caatttcatcaacatcataatgatctaatttgtcacttaagccacttaccttgttaggtt 715
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 31756 caatttcatcaacatcataatgatctaatttctcaattaagccacttaccttgttaggtt 31697
Query: 716 catatctaatagcagagagaagcaatagaccttgcaaagcaggattgtcatttgaaggag 775
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 31696 catatctaatagcagagagaagcaataaaccttgcaaagcaggattgtcattgaaaggag 31637
Query: 776 atggctctaggataatcttgtctaacaattc-agtaactccgtcttt-atccgttagaca 833
||||||||||||||||||| ||||||||||| | ||||||||||||| ||||||||||||
Sbjct: 31636 atggctctaggataatcttctctaacaattcaattaactccgtctttaatccgttagaca 31577
Query: 834 tagagccctg-acagtcaaagacactgattttggatcaataagctcaggaatgcca 888
|| | |||| |||||||||||||||| || ||||||| |||||||||||||||||
Sbjct: 31576 taaaagcctgcacagtcaaagacactggttctggatcagtaagctcaggaatgcca 31521
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6391
Number of Sequences: 1807
Number of extensions: 6391
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)