BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB02RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig857 1310 0.0
>3x_Contig857
Length = 2588
Score = 1310 bits (661), Expect = 0.0
Identities = 782/813 (96%), Gaps = 7/813 (0%)
Strand = Plus / Plus
Query: 89 atatatatttacagacaacatacaaagatctgtaatgaatgtatcgaaattgataaaatg 148
|||||||||||||||||||||||||||||| || | |||||| ||||||||||||||
Sbjct: 1612 atatatatttacagacaacatacaaagatcgttagtcaatgtagttaaattgataaaatg 1671
Query: 149 actgtttgaaattat-attgaatatactatcagtgattcaagtggaaattactcaatggc 207
| ||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 1672 aatgtttgaaattattattgaatat-ctatcagtgattcaagtggaaattcctcaatggc 1730
Query: 208 ggaacgtatatctattagacatccattgtattaaccaaaccat-atatggctgtgcgact 266
|||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1731 ggaacgtatatcgatgagacatccattgtattaaccaaaccaagatatggctgtgcgact 1790
Query: 267 tctaaattcaatgcaataccactggtaatactagcatattgcttatgatctctacaatag 326
|| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 1791 tcgaaattcaatgcaataccactggtaatacgagcatattgcttaggatctctacaatag 1850
Query: 327 acaccgtatcgttttaccaattggtactaaagtataattctgtcattatcttatttattg 386
|||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct: 1851 acaccgtaacgttttaccaattggtagtaaagtagaattctgtcattatcttctttattg 1910
Query: 387 gtttgagtattcaagtgatcatcatgttatgtaccggaggtaggttcattgaaatcatca 446
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 1911 gtttgagtattcaagtgatcagcatgttttgtaccggaggtaggttcattgaaatcatca 1970
Query: 447 aatgccccactggcattagcggcttccaaagctggattataagaatcagatgtagtcatt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1971 aatgccccactggcattagcggcttccaaagctggattataagaatcagatgtagtcatt 2030
Query: 507 tcatagctgccgccgtttttaaactgttcttgggtgtacgttacagtaacatctcttaga 566
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2031 tcatagctgccgccgtttttaaactgttcttgggtgtacgttacagtagcatctcttaga 2090
Query: 567 gctgcccaatcagcattggcgatatacgtctggccaatttgatcagctttttggattaat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2091 gctgcccaatcagcattggcgatatacgtctggccaatttgatcagctttttggattaat 2150
Query: 627 tgaacccatttctcacggatgacatcatttggaacactgatacttcccatagccttcaag 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2151 tgaacccatttctcacggatgacatcatttggaacactgatacttcccatagccttcaag 2210
Query: 687 ataatacggtaggtgacgatggtctttggaatgtggtatagctcgtatgacttttcgata 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2211 ataatacggtaggtgacgatggtctttggaatgtggtatagctcgtatgacttttcgata 2270
Query: 747 gattcgataatatttctatcttgccaaacggtacatttagttaaaatgatgttcaagaa- 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2271 gattcgataatatttctatcttgccaaacggtacatttagttaaaatgatgttcaagaag 2330
Query: 806 ggttcatcgatagctttcatttcgtcatacgctgttacc-actcttggaggtgctgtgaa 864
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||
Sbjct: 2331 ggttcatcgatagctttcatttcgtcatacgctgttaccaactcttgaaggtgctgtaaa 2390
Query: 865 ccagctgcttttgtc-gtaacatagttttcgaa 896
|||||||| |||||| |||||||||||||||||
Sbjct: 2391 ccagctgc-tttgtcggtaacatagttttcgaa 2422
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7030
Number of Sequences: 1807
Number of extensions: 7030
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)