BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZB03FM1.SCF screened BAC_end
         (963 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig990                                                         1253   0.0  

>3x_Contig990 
          Length = 3707

 Score = 1253 bits (632), Expect = 0.0
 Identities = 688/700 (98%), Gaps = 5/700 (0%)
 Strand = Plus / Plus

                                                                       
Query: 88  tttgaactaagacgttttctaatgttactctttatcgacttacgaaatattttgatctat 147
           |||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct: 147 tttgaactaagacgttttctaatgtt-ctcttt-tcgactt-cgaaatattttgatctat 203

                                                                       
Query: 148 caaacaaaatatcaatgaaaagatttttccaacacttttctaagcatgccgagactttgc 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 caaacaaaatatcaatgaaaagatttttccaacacttttctaagcatgccgagactttgc 263

                                                                       
Query: 208 catcactatccattttgatattcgacaaaaactccgccagttgtttaacagaattgttag 267
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catcactatccattttgagattcgacaaaaactccgccagttgtttaacagaattgttag 323

                                                                       
Query: 268 ttatagaaaagtaactttgcaacgagcggacataagcgagtgatgagagagacagcgccg 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttatagaaaagtaactttgcaacgagcggacataagcgagtgatgagagagacagcgccg 383

                                                                       
Query: 328 aatttaagaggaaaaccacaaggggtcgtagtttcagttcaaataccttttcgataaaca 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatttaagaggaaaaccacaaggggtcgtagtttcagttcaaataccttttcgataaaca 443

                                                                       
Query: 388 aatgcatgacattcggagctttattctcgaacactgtggcgacgactttagattcgtttt 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatgcatgacattcggagctttattctcgaacactgtggcgacgactttagattcgtttt 503

                                                                       
Query: 448 caatggcgttgaagacactttggatatattcaacaactttctcgtcatatttcaatatat 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caatggcgttgaagacactttggatatattcaacaactttctcgtcatatttcaatatat 563

                                                                       
Query: 508 gtgagtcaggattcatcaattctgctttaaagacatcgtcagtgaacaatgcagattcct 567
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtgagtcaggattcatcaattctgctttaaagacatcgtcagtgaacaatgcagattcct 623

                                                                       
Query: 568 tagctgagaagtttgaagattcctcaaaaaactggtgtttatcggtgaagttcttaataa 627
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tagctgagaagtttgaagattcctcaaaaaactggtgtttatcggtgaagttcttaataa 683

                                                                       
Query: 628 tattaaccccattattgaaagtatccaaaatccaagcaagctgatgtagtcgagaatatt 687
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 684 tattaaccccattattgaaagtatccaaaatccaagcaagctgatgtagtcgagaataat 743

                                                                       
Query: 688 cattttctcgattagctgcattaaaaccttgtaaaattcctaacctcggaatcagaagct 747
           |||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| ||||
Sbjct: 744 cattttctcgataagctgcattaaaaccttgtaaaatt-ctaacctcgaaatcagtagct 802

                                                   
Query: 748 aattgctctattatttggggaactttcttgagtttttggg 787
           ||||||||||||||||| | ||| ||||||||||||||||
Sbjct: 803 aattgctctattatttgtgtaac-ttcttgagtttttggg 841


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7807
Number of Sequences: 1807
Number of extensions: 7807
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)