BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC49ZB03FM1.SCF screened BAC_end (963 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig990 1253 0.0 >3x_Contig990 Length = 3707 Score = 1253 bits (632), Expect = 0.0 Identities = 688/700 (98%), Gaps = 5/700 (0%) Strand = Plus / Plus Query: 88 tttgaactaagacgttttctaatgttactctttatcgacttacgaaatattttgatctat 147 |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| Sbjct: 147 tttgaactaagacgttttctaatgtt-ctcttt-tcgactt-cgaaatattttgatctat 203 Query: 148 caaacaaaatatcaatgaaaagatttttccaacacttttctaagcatgccgagactttgc 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 204 caaacaaaatatcaatgaaaagatttttccaacacttttctaagcatgccgagactttgc 263 Query: 208 catcactatccattttgatattcgacaaaaactccgccagttgtttaacagaattgttag 267 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 264 catcactatccattttgagattcgacaaaaactccgccagttgtttaacagaattgttag 323 Query: 268 ttatagaaaagtaactttgcaacgagcggacataagcgagtgatgagagagacagcgccg 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 324 ttatagaaaagtaactttgcaacgagcggacataagcgagtgatgagagagacagcgccg 383 Query: 328 aatttaagaggaaaaccacaaggggtcgtagtttcagttcaaataccttttcgataaaca 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 384 aatttaagaggaaaaccacaaggggtcgtagtttcagttcaaataccttttcgataaaca 443 Query: 388 aatgcatgacattcggagctttattctcgaacactgtggcgacgactttagattcgtttt 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 444 aatgcatgacattcggagctttattctcgaacactgtggcgacgactttagattcgtttt 503 Query: 448 caatggcgttgaagacactttggatatattcaacaactttctcgtcatatttcaatatat 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 504 caatggcgttgaagacactttggatatattcaacaactttctcgtcatatttcaatatat 563 Query: 508 gtgagtcaggattcatcaattctgctttaaagacatcgtcagtgaacaatgcagattcct 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 564 gtgagtcaggattcatcaattctgctttaaagacatcgtcagtgaacaatgcagattcct 623 Query: 568 tagctgagaagtttgaagattcctcaaaaaactggtgtttatcggtgaagttcttaataa 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 624 tagctgagaagtttgaagattcctcaaaaaactggtgtttatcggtgaagttcttaataa 683 Query: 628 tattaaccccattattgaaagtatccaaaatccaagcaagctgatgtagtcgagaatatt 687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 684 tattaaccccattattgaaagtatccaaaatccaagcaagctgatgtagtcgagaataat 743 Query: 688 cattttctcgattagctgcattaaaaccttgtaaaattcctaacctcggaatcagaagct 747 |||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| |||| Sbjct: 744 cattttctcgataagctgcattaaaaccttgtaaaatt-ctaacctcgaaatcagtagct 802 Query: 748 aattgctctattatttggggaactttcttgagtttttggg 787 ||||||||||||||||| | ||| |||||||||||||||| Sbjct: 803 aattgctctattatttgtgtaac-ttcttgagtttttggg 841 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7807 Number of Sequences: 1807 Number of extensions: 7807 Number of successful extensions: 49 Number of sequences better than 1.0e-20: 1 length of query: 963 length of database: 10,358,551 effective HSP length: 16 effective length of query: 947 effective length of database: 10,329,639 effective search space: 9782168133 effective search space used: 9782168133 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)