BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB03RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1755 1340 0.0
>3x_Contig1755
Length = 22936
Score = 1340 bits (676), Expect = 0.0
Identities = 724/735 (98%), Gaps = 4/735 (0%)
Strand = Plus / Minus
Query: 48 taaattctcagctcactgatttaaattggcaaaagtgttattgatggtctcctaacactt 107
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 8763 taaattctcagctcactgatttaaattgtcaaaagtgttattgatgg-ctcctaacactt 8705
Query: 108 caggcactatcgatagttccaattcttcttaattgacttttgctttccagccacaatatc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8704 caggcactatcgatagttccaattcttcttaattgacttttgctttccagccacaatatc 8645
Query: 168 gaacaaatgttctaccccaaaacacaaactaacgaaccaacacttaacctctaaagcgtg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8644 gaacaaatgttctaccccaaaacacaaactaacgaaccaacacttaacctctaaagcgtg 8585
Query: 228 tcaatactgtaacaaatatcgaatgattcacaacacagatgctgagccctaataatcaca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8584 tcaatactgtaacaaatatcgaatgattcacaacacagatgctgagccctaataatcaca 8525
Query: 288 ctaggaagcagaagaaacacacgggtacgtcagaaaccacaacattcaccgattcgttga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8524 ctaggaagcagaagaaacacacgggtacgtcagaaaccacaacattcaccgattcgttga 8465
Query: 348 ttctcatgataataatcaacatgctaaatttcgattttcaccggaaggtctagatttgaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8464 ttctcatgataataatcaacatgctaaatttcgattttcaccggaaggtctagatttgaa 8405
Query: 408 ttttcatgcaaagagatagagaaaaagccgcccatgcccgggtaacaaatgttcttctgg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8404 ttttcatgcaaagagatagagaaaaagccgcccatgcccgggtaacaaatgttcttctgg 8345
Query: 468 cttcggaaatgaaagtattaaacacgaagcctgacatcctgtctcgaaaagttgcgaaac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8344 cttcggaaatgaaagtattaaacacgaagcctgacatcctgtctcgaaaagttgcgaaac 8285
Query: 528 agctcggtaccggtatcattacgttgttaaaggggcgatataatggttggaacttgcgtt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8284 agctcggtaccggtatcattacgttgttaaaggggcgatataatggttggaacttgcgtt 8225
Query: 588 ttgtttctggagtgcattgtataagagttactgaacaactactagcattntaataagcta 647
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 8224 ttgtttctggagtgcattgtataagagttactgaacaactactagcattttaataagcta 8165
Query: 648 attagatcaatcagtacccggataatttgttacccggacag-aaatacattcttctccgc 706
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 8164 attagatcaatcagtacccggataatttgttacccggacagaaaatacatccttctccgc 8105
Query: 707 ttcttattcagcagctgtaacctgataa-gccacttctctatggcaa-tatttagtcaga 764
| ||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||
Sbjct: 8104 tctttattcagcagctgtaacctgataatgccacttctctatggcaattatatagtcaga 8045
Query: 765 cttgttaaccccgta 779
|||||||| ||||||
Sbjct: 8044 cttgttaagcccgta 8030
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6029
Number of Sequences: 1807
Number of extensions: 6029
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)