BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZB04FM1.SCF screened BAC_end
         (909 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1652                                                        1509   0.0  

>3x_Contig1652 
          Length = 14842

 Score = 1509 bits (761), Expect = 0.0
 Identities = 804/818 (98%), Gaps = 1/818 (0%)
 Strand = Plus / Minus

                                                                         
Query: 86    taatttcttgacaatttctacatcttgcatagatctcctctacaataccagtcgcagcta 145
             ||||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||||
Sbjct: 11935 taatttcttcacaatttctacg-cttgcatcgatctcctctacaataccagtcgcagcta 11877

                                                                         
Query: 146   ttctgaaacttccagttggatcactgttagcaactatttgaacaccacagaaagtggtat 205
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 11876 ttctgaaacttccagttgtatcactgttagcaactatttgaacaccacagaaagtggtat 11817

                                                                         
Query: 206   ttggcgagcacaagggaccatagaaagaagctgtacaataagcatgttctggagtatact 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11816 ttggcgagcacaagggaccatagaaagaagctgtacaataagcatgttctggagtatact 11757

                                                                         
Query: 266   tcaacattctagtcctggttctagagtcactagtggtgtatattggtagagtttggaaac 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11756 tcaacattctagtcctggttctagagtcactagtggtgtatattggtagagtttggaaac 11697

                                                                         
Query: 326   gtctccaaccaagagataaaactaaaggatcatttgtcttgagaatctttttgtgccaac 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11696 gtctccaaccaagagataaaactaaaggatcatttgtcttgagaatctttttgtgccaac 11637

                                                                         
Query: 386   gatgtcttctgactcttgcattaataattccgaacttcaattctgtgggaagaagacctc 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11636 gatgtcttctgactcttgcattaataattccgaacttcaattctgtgggaagaagacctc 11577

                                                                         
Query: 446   ccataattactggatactttgggttgaaattttcgatgaattccataggaaccttatcga 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11576 ccataattactggatactttgggttgaaattttcgatgaattccataggaaccttatcga 11517

                                                                         
Query: 506   agacaatacgaacataagacccagctttcataccttcgatttgttgcctttgttcaggag 565
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11516 agacaatacgaacataagacccagctttcataccttcgatttgttgcctttgttcaggag 11457

                                                                         
Query: 566   tcatagattccagttcggctttattgatttctaattgtttagcaatcttagccttctgta 625
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11456 tcatagattccagttcggctttattgatttctaattgtttagcaatcttagccttctgta 11397

                                                                         
Query: 626   attcgtaccaggtatcgtattcattttcagggtcttctccaaagttgtctccttcttcca 685
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11396 attcgtaccaggtatcgtattcattttcagggtcttctccaaagttgtctccttcttcca 11337

                                                                         
Query: 686   tttcgaattgtaaccttaatttctctttttttgcggcattcaattcacgctcttcatcct 745
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11336 tttcgaattgtaaccttaatttctctttttttgcggcattcaattcacgctcttcatcct 11277

                                                                         
Query: 746   gngtcanatccttcttttcttcttcttcgaaatcagcgaacgattcgttgctatcagatt 805
             | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11276 gggtcaaatccttcttttcttcttcttcgaaatcagcgaacgattcgttgctatcagatt 11217

                                                                         
Query: 806   cttcatctcctgcagcagaattctcctccttctcatctggggtttcaagctcagctttct 865
             ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||   
Sbjct: 11216 cttcatctcctgcagcagaattctcctccttctcatctgtgttttcaggctcagcttcta 11157

                                                   
Query: 866   agtcctcaaaatcaccgnatacttcatcttcatcatcg 903
             ||||||||||||||||| ||||||||||||||||||||
Sbjct: 11156 agtcctcaaaatcaccgtatacttcatcttcatcatcg 11119


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7973
Number of Sequences: 1807
Number of extensions: 7973
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)