BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB04RM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1575 1548 0.0
>3x_Contig1575
Length = 11952
Score = 1548 bits (781), Expect = 0.0
Identities = 843/856 (98%), Gaps = 6/856 (0%)
Strand = Plus / Minus
Query: 50 ctgtactaccgtagagtttgaaactggttatgccaacatagaaaaacaatccaggccggg 109
|||| |||||||| ||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 5959 ctgtcctaccgtaaagtttgaaactggttttgccaacatagaaaa-caatccaggccggt 5901
Query: 110 tctcagtcccacgcattt-atagtacgcgtcagtataggtaaaatccaaaaaaaaaaaaa 168
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5900 tctcagtcccacgcatttcatagtacgcgtcagtataggtaaaatccaaaaaaaaaaaaa 5841
Query: 169 gttgaagatttcagaatattagcatagaggccaaaatccaacaaaaattatactctatac 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5840 gttgaagatttcagaatattagcatagaggccaaaatccaacaaaaattatactctatac 5781
Query: 229 tttgcgtaggcatattttgccatactgaaaaagttccattttttttttttttaatgtttt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5780 tttgcgtaggcatattttgccatactgaaaaagttccattttttttttttttaatgtttt 5721
Query: 289 accctaaccaactgattcttttcaaagaaaaaatcatattcaagtcccacagaaaagagg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5720 accctaaccaactgattcttttcaaagaaaaaatcatattcaagtcccacagaaaagagg 5661
Query: 349 gtagggtaaatctgccatatccttcaatttagatggaattggcggctaaaagacgaattc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5660 gtagggtaaatctgccatatccttcaatttagatggaattggcggctaaaagacgaattc 5601
Query: 409 catgaaatatagagaaacagcaagaaataatgccatctaagctatattgtaaacctcgta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5600 catgaaatatagagaaacagcaagaaataatgccatctaagctatattgtaaacctcgta 5541
Query: 469 gataagtttgatagaaacgatcaatcagattggaaaggaggcaaagttagagggtttctt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5540 gataagtttgatagaaacgatcaatcagattggaaaggaggcaaagttagagggtttctt 5481
Query: 529 agggaaggcggtctcttaattcctgtcacgtggcaataaattccctttcgattcttcata 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5480 agggaaggcggtctcttaattcctgtcacgtggcaataaattccctttcgattcttcata 5421
Query: 589 caactgtgagttggtactctcttttctgaagtcctgcttcaaaagatactggtagtttgt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5420 caactgtgagttggtactctcttttctgaagtcctgcttcaaaagatactggtagtttgt 5361
Query: 649 tgacacatacttatctgagttctaactagctagtttgggaaagttttggtttggtttgac 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5360 tgacacatacttatctgagttctaactagctagtttgggaaagttttggtttggtttgac 5301
Query: 709 cagcgacaatacttagaaatggtcagtgtcttggcgacttcaggttacacaatttaccct 768
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5300 cagcgacaatacttagaaatggtcagtgtcttggcgacttcagtttacacaatttaccct 5241
Query: 769 tctgtctcttatatgtatcgctntatatattctgattcctatttaattgggacttc-tgt 827
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||
Sbjct: 5240 tctgtctcttatatgtatcgctttatatattctgattcctatttaattgg-acttcctgt 5182
Query: 828 cctttcatatttgccgccatgaccactttt-tcaacgttcgttatccttg-acatgatgg 885
|||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||
Sbjct: 5181 cctttcatatttgccgccatgaccacttttctcaacgttcgttattcttgcacatgatgg 5122
Query: 886 aatgctgttttttctt 901
||||||||||||||||
Sbjct: 5121 aatgctgttttttctt 5106
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,681
Number of Sequences: 1807
Number of extensions: 22681
Number of successful extensions: 525
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)