BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB05FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 1338 0.0
>3x_Contig1629
Length = 12481
Score = 1338 bits (675), Expect = 0.0
Identities = 784/811 (96%), Gaps = 7/811 (0%)
Strand = Plus / Minus
Query: 88 gactatttaaaaaacatgaaaaaatcaagtgaaaaatttttaatagttcttcatctcatc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10492 gactatttaaaaaacatgaaaaaatcaagtgaaaaatttttaatagttcttcatctcatc 10433
Query: 148 atatgtaaagttgaaagtgtttaatggtatctactttgtttatttcccttccccatcgca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10432 atatgtaaagttgaaagtgtttaatggtatctactttgtttatttcccttccccatcgca 10373
Query: 208 aaactctagatcgtattccacagctctagctagttaatattaatacacaatgtctcacag 267
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10372 aaactctagaacggtaaccacagctctagctagttaatattaatacacaatgtctcacag 10313
Query: 268 aaagtacgaagctccacgtcacggtcatttaggtttcttgccaagaaagagagctgcctc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10312 aaagtacgaagctccacgtcacggtcatttaggtttcttgccaagaaagagagctgcctc 10253
Query: 328 tgttagaggtagagttaagtctttcccaaaggacgaccaaactaagccagttgctttgac 387
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 10252 tgttagaggtagagttaagtctttcccaaaggacgaccaaactaaggcagttgctttgac 10193
Query: 388 ctctttcttgggttacaaggctggtatgtccactatcgttagagacttggacagaccagg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10192 ctctttcttgggttacaaggctggtatgtccactatcgttagagacttggacagaccagg 10133
Query: 448 ttccaagttccacaagcgtgaagttgttgaagctgttaccgttgttgacaccccaccaat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10132 ttccaagttccacaagcgtgaagttgttgaagctgttaccgttgttgacaccccaccaat 10073
Query: 508 cgttgttgtcggtgttgttggttacgttgaaaccccaagaggtttgagatccttgaccac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10072 cgttgttgtcggtgttgttggttacgttgaaaccccaagaggtttgagatccttgaccac 10013
Query: 568 cgtctgggctgaacatttgtccgacgaagtcaagagaagattctacaagaactggtacaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10012 cgtctgggctgaacatttgtccgacgaagtcaagagaagattctacaagaactggtacaa 9953
Query: 628 gtccaagaagaaggctttcaccaagtactctgctaagtacgctgaaaacggtgcccaagt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9952 gtccaagaagaaggctttcaccaagtactctgctaagtacgctgaaaacggtgcccaagt 9893
Query: 688 cgacagagaattggccagaatcaagaagtacgctttctgttgttagagtctttggtccac 747
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 9892 cgacagagaattggccagaatcaagaagtacgc-ttctgttgttagagtc-ttggtccac 9835
Query: 748 accccagtcagaaagactccattgttctcaaaagaaggctcattttggcctgaatccaat 807
|||| ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||
Sbjct: 9834 acccaagtcagaaagactccattg-tctcaaaagaaggctca-tttggctgaaatccaat 9777
Query: 808 tgaacggtgtttctgtcttttgacaggtttgactgggcttaagaaccactttaaaaagac 867
||||||||| ||||||| | ||||| | |||||||||| |||| | ||||| |||||||
Sbjct: 9776 tgaacggtggttctgtc-tctgacaaggttgactgggc-taaggaacacttcgaaaagac 9719
Query: 868 cgtggccgttgactttgtctttcgaacaaaa 898
||| |||||||||| |||| |||||||||||
Sbjct: 9718 cgttgccgttgactctgtc-ttcgaacaaaa 9689
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6779
Number of Sequences: 1807
Number of extensions: 6779
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)