BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB05RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1673 1629 0.0
>3x_Contig1673
Length = 13723
Score = 1629 bits (822), Expect = 0.0
Identities = 862/872 (98%), Gaps = 3/872 (0%)
Strand = Plus / Minus
Query: 47 taaagctcatcgcatctcatcgcatccaagctcacctgcatctatatatcaaaatctcgt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8671 taaagctcatcgcatctcatcgcatccaagctcacctgcatctatatatcaaaatctcgt 8612
Query: 107 tgataacaggctggtagtctgaatgttataggcctctgtgacattaacagtcaagagaag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8611 tgataacaggctggtagtctgaatgttataggcctctgtgacattaacagtcaagagaag 8552
Query: 167 tacctcgcacgttaaacggtcaaaaaattgaacaacaaacatgggtacctataggaagcg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8551 tacctcgcacgttaaacggtcaaaaaattgaacaacaaacatgggtacctataggaagcg 8492
Query: 227 ctggaatgagaaagcacgcgcgggtcagatgtctaagttgaaggagttgaagagagtaag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8491 ctggaatgagaaagcacgcgcgggtcagatgtctaagttgaaggagttgaagagagtaag 8432
Query: 287 gaataggcagttcacccgtgcacttgaaaattcttccgatgctgattctgaagaaggtaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8431 gaataggcagttcacccgtgcacttgaaaattcttccgatgctgattctgaagaaggtaa 8372
Query: 347 ttcatctgaagatgaacatcatgaatcacccgatcatcaggaagatacgaacgctgctgt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8371 ttcatctgaagatgaacatcatgaatcacccgatcatcaggaagatacgaacgctgctgt 8312
Query: 407 attgaaacccatgacggaggaagagaaacaagagaaaaagcgtaaattggaagagctatt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8311 attgaaacccatgacggaggaagagaaacaagagaaaaagcgtaaattggaagagctatt 8252
Query: 467 cacacctaaggaaacgaaggtctctaggacgaagaaaaaaaggttagagaagttcatcga 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8251 cacacctaaggaaacgaaggtctctaggacgaagaaaaaaaggttagagaagttcatcga 8192
Query: 527 gcatcaattgaaaagagaggagaaaaaagttttgatagaaaaacttcaggactataaaat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8191 gcatcaattgaaaagagaggagaaaaaagttttgatagaaaaacttcaggactataaaat 8132
Query: 587 tgatactaagcttttgacaagttctaagattttgggacaaggaaggcaaactaagaggca 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8131 tgatactaagcttttgacaagttctaagattttgggacaaggaaggcaaactaagaggca 8072
Query: 647 agggattgaagaagccctcaaattagaaagaaatggacgtggtgatgaaactaccagggg 706
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 8071 agggattgaagaagccctcaaataagaaagaaatggacgtggtgatgaaactacca-ttt 8013
Query: 707 aaattctttacgatgaaactgangtaagggattggtatcaagatcatccagaaactaggc 766
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 8012 aaattctttacgatgaaactgaggtaagggattggtatcaagatcatccagaaactaggc 7953
Query: 767 ccagtcaggaaagcacagctgaaaattgcaattcggatagtgatgaaacggaccatacca 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7952 ccagtcaggaaagcacagctgaaaattgcaattcggatagtgatgaaacggaccatacca 7893
Query: 827 gttcagatcaccctatttc-gccaatactgggggatttattgataatagacccagtnaat 885
||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||
Sbjct: 7892 gttcagatcaccctatttcggcaaatactgggggatttattgataatagacccagtaaat 7833
Query: 886 ttggtgggtcaggtttttggttttggattcgg 917
||||||||||||| ||||||||||||||||||
Sbjct: 7832 ttggtgggtcagg-ttttggttttggattcgg 7802
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7684
Number of Sequences: 1807
Number of extensions: 7684
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)