BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB06FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig893 1189 0.0
>3x_Contig893
Length = 2804
Score = 1189 bits (600), Expect = 0.0
Identities = 717/744 (96%), Gaps = 9/744 (1%)
Strand = Plus / Plus
Query: 84 tggaaagatcaaaaccgtatactgcgagaatggtaaagcataaggaaatttatgattaga 143
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2028 tggaaagatcaaaaccgtatacagcgagaatggtaaagcataaggaaatttatgattaga 2087
Query: 144 atacacctctgcgtaatggttggcggtatcatgtatgtatgaagggtatgtatatatgta 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2088 atacacctctgcgtaatggttggcggtatcatgtatgtatgaagggtatgtatatatgta 2147
Query: 204 cggctggatggattttgtgaatgaggtccctgttgcaatttttctcatttcttccatggt 263
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2148 cggctggatggatattgtgaatgaggtccctgttgcaatttttctcatttcttccatggt 2207
Query: 264 gatttgaaagcccaattcccgagacgatttccctttggattggtggcatctatggtccaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2208 gatttgaaagcccaattcccgagacgatttccctttggattggtggcatctttggtccaa 2267
Query: 324 gtcttacctgtgcgtaattcatagttctctttttctaattcgtcaaggcgtgttctgagc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2268 gtcttacctgtgcgtaattcatagttctctttttctaattcgtcaaggcgtgttctgagc 2327
Query: 384 tcttgattttcgtccataacttccagatttctttccattgttctattcaaatctgctttc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2328 tcttgattttcgtccataacttccagatttctttccattgttctattcaaatctgctttc 2387
Query: 444 aaatctgtgggaatttcagcatctggattaggtaacgtttgtttataaagttcacgttcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2388 aaatctgtgggaatttcagcatctggattaggtaacgtttgtttataaagttcacgttcc 2447
Query: 504 agttgtttcttcaaatcttctatctctagtaataaatccttattttcgtcctgaagagtt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2448 agttgtttcttcaaatcttctatctctagtaataaatccttattttcgtcctgaagagtt 2507
Query: 564 tccatccgaagtctgttttcaattagttcattggcaatagtgatatgctctctgttt-at 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2508 tccatccgaagtctgttttcaattagttcattggcaatagtgatatgctctctgtttaat 2567
Query: 623 agcgaatagtcattttctaa-tttctt-aactctttttgaagctgtctgttttttattct 680
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct: 2568 agcgaatagtcattttctaattttcttcaactctttttgaagctgtctgttttaaattct 2627
Query: 681 ttgttcctcatattggtggcccttttccgtttccaacttgcgaaatctcatcgtacatct 740
||||||||||||||| || |||||||||||||||||||| | ||||||||||||| |||
Sbjct: 2628 ttgttcctcatattgttgttccttttccgtttccaacttgtg-aatctcatcgtac-tct 2685
Query: 741 ttcacgtaacgctcccattgccaatggaagtaattttgatttcccaacgatccagaaatg 800
||||||||||||||| | | |||||| ||| | |||||||| ||||||| |||| |||
Sbjct: 2686 ttcacgtaacgctccaaattgcaatgg-agttaatttgattt-ccaacgaatcagagatg 2743
Query: 801 aaatctatcaatattcgtactctt 824
|||||||||||| ||||||||||
Sbjct: 2744 -aatctatcaata-tcgtactctt 2765
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8656
Number of Sequences: 1807
Number of extensions: 8656
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)