BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZB06RM1.SCF screened BAC_end
         (965 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1563                                                        1318   0.0  

>3x_Contig1563 
          Length = 10839

 Score = 1318 bits (665), Expect = 0.0
 Identities = 725/737 (98%), Gaps = 6/737 (0%)
 Strand = Plus / Minus

                                                                        
Query: 51   aacaatcaaaactctcgttgatcctagctaggacataggctcggaggaagcgtttgtgcc 110
            ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 1348 aacaatcaaaactctcgttgatcctag-taggacatagtctcggaggaagcgtttgtgcc 1290

                                                                        
Query: 111  aatctgtatgagcatttaccagaatacatcaagagacataccacaggattggccatgcta 170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 aatctgtatgagcatttaccagaatacatcaagagacataccacaggattggccatgcta 1230

                                                                        
Query: 171  gatattgtcgaagagatggcaaagtttgtgttgactaaggtagatcatttcctttctgtc 230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 gatattgtcgaagagatggcaaagtttgtgttgactaaggtagatcatttcctttctgtc 1170

                                                                        
Query: 231  actcccaatgtctttggttctgctaaagaagcagtagattggtatcaat-ctcataacta 289
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1169 actcccaatgtctttggttctgctaaagaagcagtagattggtatcaatactcataacta 1110

                                                                        
Query: 290  ttctaaactgaaagaaagtgcagagatctctgttccagcgctattccataaggcaaaatc 349
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1109 ttctaaactgaaagaaagtgcagaaatctctgttccagcgctattccataaggcaaaatc 1050

                                                                        
Query: 350  aggcaaagttgtacggataacgaatcttgcatcattcaagccatattgggat-tctt-gg 407
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 1049 aggcaaagttgtacggataacgaatcttgcatcattcaagccatattgggatatctttgg 990

                                                                        
Query: 408  ttcgatggattatctgccaaattcgtatcacttccaaccagtaaacttctcatcttagca 467
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989  ttcaatggattatctgccaaattcgtatcacttccaaccagtaaacttctcatcttagca 930

                                                                        
Query: 468  ggcaatgataatttggataaggaactaattgttggccaaatgcaaggtaagtaccagcta 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929  ggcaatgataatttggataaggaactaattgttggccaaatgcaaggtaagtaccagcta 870

                                                                        
Query: 528  attgtgttccaggattctggacatttcattcaagaggacgttcccaaaaaggcagctatt 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869  attgtgttccaggattctggacatttcattcaagaggacgttcccaaaaaggcagctatt 810

                                                                        
Query: 588  tctctagtggatttttggaaacgtagtgataataggaacgttacaa-taaaacgaattgg 646
            |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 809  tctctagtggatttttggaaacgtagtgctaataggaacgttacaattaaaacgaattgg 750

                                                                        
Query: 647  ggcagctctcaaaataagaccttagagggaaaaaagactgttgagtgatgtttgccttgg 706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749  ggcagctctcaaaataagaccttagagggaaaaaagactgttgagtgatgtttgccttgg 690

                                                                        
Query: 707  tactctgtcatgagtaaataacattttgaaggaattgactgtcataatcggatcatatgg 766
            ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| 
Sbjct: 689  tactctgtcatgagtaaataaca-tttgaaggaattgactgtcataatcgtatcatatgt 631

                             
Query: 767  atatatatatatatata 783
            |||||||||||||||||
Sbjct: 630  atatatatatatatata 614


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,259
Number of Sequences: 1807
Number of extensions: 11259
Number of successful extensions: 1389
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)