BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZB07FM1.SCF screened BAC_end
         (902 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1797                                                        1467   0.0  

>3x_Contig1797 
          Length = 34782

 Score = 1467 bits (740), Expect = 0.0
 Identities = 802/818 (98%), Gaps = 4/818 (0%)
 Strand = Plus / Minus

                                                                         
Query: 88    tcgaagaatatggtagcgcctataattacatccaaaaaattactcgtgcaagtgctaatc 147
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30295 tcgaagaatatggtagcgcctataattacatccaaaaaattactcgtgcaagtgctaatc 30236

                                                                         
Query: 148   agaaaacggcagaggtgttgcattttaaatctcaaagtattaatttaaaaatattaatga 207
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30235 agaaaacggcagaggtgttgcattttaaatctcaaagtattaatttaaaaatattaatga 30176

                                                                         
Query: 208   acaacattagccttgaactttccatggatcctattaaatcaaccctacctcatacacttt 267
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30175 acaacattagccttgaactttccatggatcctattaaatcaaccctacctcatacacttt 30116

                                                                         
Query: 268   ttgatgttgaaaaaatatcattactattaatcagaggcgataaaaaagttcttattggaa 327
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30115 ttgatgttgaaaaaatatcattactattaatcagaggcgataaaaaagttcttattggaa 30056

                                                                         
Query: 328   cactgtcgaatctcataataagttcaaaaactaacggctgttttcacgttgaatccttcg 387
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30055 cactgtcgaatctcataataagttcaaaaactaacggctgttttcacgttgaatccttcg 29996

                                                                         
Query: 388   accataagtttggtgcaatcgacataaatacccgcacaaaagctgttctagagtcattac 447
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29995 accataagtttggtgcaatcgacataaatacccgcacaaaagctgttctagagtcattac 29936

                                                                         
Query: 448   atctatttctttctcaagctgaactggaattaatatcttccaatttgattgcattctgtg 507
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29935 atctatttctttctcaagctgaactggaattaatatcttccaatttgattgcattctgtg 29876

                                                                         
Query: 508   gttctatttcgtcatttacaaatcccaatactagaaacaacggccatgaaaatgttacta 567
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29875 gttctatttcgtcatttacaaatcccaatactagaaacaacggccatgaaaatgttacta 29816

                                                                         
Query: 568   aaaagagcgttagattgttgcattcttctaatgttatgaataaaagggctactctttcaa 627
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29815 aaaagagcgttagattgttgcattcttctaatgttatgaataaaagggctactctttcaa 29756

                                                                         
Query: 628   acttcgttcttcaggtccataaagctaagatgaccattacaaacactcttg-aaacactt 686
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 29755 acttcgttcttcaggtccataaagctaagatgaccattacaaacactcttgaaaacactt 29696

                                                                         
Query: 687   tcggtgacataacaatagaggcaaatttcgtgtatactatctcangacccaaataagaca 746
             |||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||
Sbjct: 29695 tcggtgacataacaatagaggc-aatttcgtgtatactatctcaggaccaaaataagaca 29637

                                                                         
Query: 747   ctctgtggcattgttaaagaaacagggctac-acggctgtacatgagagagaaaaccgac 805
             ||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||
Sbjct: 29636 ctctgtggcattgttaaagaagcaaggctacaacggctgtacatgagagagaaaaccgac 29577

                                                                         
Query: 806   attatatgntatgtaaaccatgatatgagtaaacccacattgattttaaacatgcc-aac 864
             ||||||||  |||||||||||||||  ||||||||   |||||| ||||||||||| |||
Sbjct: 29576 attatatgtaatgtaaaccatgatagaagtaaaccacaattgatattaaacatgccaaac 29517

                                                   
Query: 865   tctggaaaaccgaagctttatttgaaagggttgggatt 902
             ||||||||||||||||||||||||||||||||||||||
Sbjct: 29516 tctggaaaaccgaagctttatttgaaagggttgggatt 29479


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6744
Number of Sequences: 1807
Number of extensions: 6744
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)