BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB07RM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1558 1582 0.0
>3x_Contig1558
Length = 12860
Score = 1582 bits (798), Expect = 0.0
Identities = 840/850 (98%), Gaps = 4/850 (0%)
Strand = Plus / Minus
Query: 46 agcttctcctgaacaaccaaaagctctc-taactgatggaatc-caactgcagtaaattc 103
|||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 8309 agctactcctgaacaaccaaaagctctcataactgatggaatcacaactgcagtaaattc 8250
Query: 104 gaattgtcttatatcctcttgatgtttcctggaatatctgaatagtccataaggagtgaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8249 gaattgtcttatatcctcttgatgtttcctggaatatctgaatagtccataaggagtgaa 8190
Query: 164 aagttcggacatgaccttaacccagtatttcatatcgtttagcttattgctggatacatt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8189 aagttcggacatgaccttaacccagtatttcatatcgtttagcttattgctggatacatt 8130
Query: 224 gagcaaatttattatctcatgcgctcgaaggatagccaaattagaaagatattttctaag 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8129 gagcaaatttattatctcatgcgctcgaaggatagccaaattagaaagatattttctaag 8070
Query: 284 aggatagggataggttgaagaaatctgagaaggtatcgcacgatttagaccaagcagcgc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8069 aggatagggataggttgaagaaatctgagaaggtatcgcacgatttagaccaagcagcgc 8010
Query: 344 aggatttggactggcaccaggattttgtcctattaatggtgcattacctaaatttggagc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8009 aggatttggactggcaccaggattttgtcctattaatggtgcattacctaaatttggagc 7950
Query: 404 cattccatgcattgggtgcggtggtggatgtgtaggaggcacttgctgctgctgctgctg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7949 cattccatgcattgggtgcggtggtggatgtgtaggaggcacttgctgctgctgctgctg 7890
Query: 464 ctgatgagagttgtgtggatgaggatgagagttatgctgaggttgcgaaagtggatgcgg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7889 ctgatgagagttgtgtggatgaggatgagagttatgctgaggttgcgaaagtggatgcgg 7830
Query: 524 atgtgatgccaaaggttgctgagactgtatctgaacatttgcagttgattgttggccttg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7829 atgtgatgccaaaggttgctgagactgtatctgaacatttgcagttgattgttggccttg 7770
Query: 584 cgcttgctgcggtacatggtgttgaagttgttggcgtcgtattccttgctgattttgcag 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7769 cgcttgctgcggtacatggtgttgaagttgttggcgtcgtattccttgctgattttgcag 7710
Query: 644 tgtctgagagctctgtaaatttggctgctgaccagactgttgtggtgtcactggtaaagg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7709 tgtctgagagctctgtaaatttggctgctgaccagactgttgtggtgtcactggtaaagg 7650
Query: 704 accatgattggaaggtctatctgctgcattgccggtatctncctgttgttgcggattaaa 763
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7649 accatgattggaaggtctatctgctgcattgccggtatctccctgttgttgcggattaaa 7590
Query: 764 gtaaccttgggtgtacggacccgnacccgntggcaattgacctgngaaagatggttgcat 823
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct: 7589 gtaaccttgggtgtacggacccggacccggtggcaattgacctgggaaagatggttgcat 7530
Query: 824 cctttggttctgaatattggggccttgcataccgtaggcttgtggctggttctga-atag 882
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 7529 cccttggttctgaatattggggccttgcataccgta-gcttgtggctggttctgatatag 7471
Query: 883 tccattaaat 892
||||||||||
Sbjct: 7470 tccattaaat 7461
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5828
Number of Sequences: 1807
Number of extensions: 5828
Number of successful extensions: 292
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)