BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB09FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig959 1388 0.0
>3x_Contig959
Length = 3065
Score = 1388 bits (700), Expect = 0.0
Identities = 786/804 (97%), Gaps = 8/804 (0%)
Strand = Plus / Plus
Query: 86 cctacaaccacgcaaacttgggtaaattaagttacaaagtcgtctcagaaccatggatgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 cctacaaccacgcaaacttgggtaaattaagttacaaagtcgtctcagaaccatggatgt 85
Query: 146 acggtactgattctccaaatgataagaccccaatgctacaatgttacatgtacttgaaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 acggtactgattctccaaatgataagaccccaatgctacaatgttacatgtacttgaaac 145
Query: 206 tagaccatcccgatgctaaccattactccgtgccattgaggttttcaccagttttcgaat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tagaccatcccgatgctaaccattactccgtgccattgaggttttcaccagttttcgaat 205
Query: 266 acttgtctttgaaatttgttagaatggattatttaccttctggtgctgatgaactataca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 acttgtctttgaaatttgttagaatggattatttaccttctggtgctgatgaactataca 265
Query: 326 tcaaagaaactttaccattcaaggcaatcccaactgtcgaataccacccagacgtcatcg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcaaagaaactttaccattcaaggcaatcccaactgtcgaataccacccagacgtcatcg 325
Query: 386 agaacttccaggaacgtgaaggcttgaaaccattactcatccaacaacctgaaggtgcct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agaacttccaggaacgtgaaggcttgaaaccattactcatccaacaacctgaaggtgcct 385
Query: 446 ctttcaacgttgacggtacaaagatcacttggcaaggttgggaatttagagtcgctacga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctttcaacgttgacggtacaaagatcacttggcaaggttgggaatttagagtcgctacga 445
Query: 506 actgtagggaaggtttcgcgttgtatgatgttcacttcaagggcagatccttgatctatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 actgtagggaaggtttcgcgttgtatgatgttcacttcaagggcagatccttgatctatc 505
Query: 566 gtggaagtctcgaagagatgaccgttccgtaccttgacagtcgcgctccgtaccacagga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtggaagtctcgaagagatgaccgttccgtaccttgacagtcgcgctccgtaccacagga 565
Query: 626 agcaagccttcgatctaggtgattgtgggtttcggt-acactgcgaattctttggcttta 684
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 566 agcaagccttcgatctaggtgattgtggg-ttcggtaacactgcgaattctttggcttta 624
Query: 685 agctgtccattgtttgggtgttatcaaatatttggatacaacaagaaccgacgcagatgg 744
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 ggctg-ccattgtttgggtgttatcaaatatttggatacaacaagagccgacgcagatgg 683
Query: 745 tagtccagttttgatttcttcaaccat-tgtatgcacgaacaagactacggtttgctatc 803
|||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 684 tagtccagttttgattccatcaaccatctgtatgcacgaacaagactacggtttgctatt 743
Query: 804 cttgcacca-aactacagaactgtgttctactgttgc-accacaagaagaaaattggtct 861
||||||||| ||||||||||||| ||||||||||||| |||| ||||||| |||| |||
Sbjct: 744 cttgcaccagaactacagaactg-gttctactgttgcaaccagaagaagagaatttgtca 802
Query: 862 tttaaacaatc-caaccgtcgcta 884
|| |||||||| ||||||||||||
Sbjct: 803 ttcaaacaatcgcaaccgtcgcta 826
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6215
Number of Sequences: 1807
Number of extensions: 6215
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)