BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB09RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig879 587 e-167
3x_Contig782 571 e-163
>3x_Contig879
Length = 2855
Score = 587 bits (296), Expect = e-167
Identities = 386/415 (93%), Gaps = 1/415 (0%)
Strand = Plus / Minus
Query: 444 tggatccactatagagcctaaagatttccatttagttaactgtagttgcgcgatttcacg 503
|||||| ||||| |||| |||||||||| |||||||||| |||||||| | ||||| |||
Sbjct: 2671 tggatcaactatggagcataaagatttcaatttagttaaatgtagttgagagatttaacg 2612
Query: 504 aacaattggatcattggaccccagtaacgttatcaaaacagataaatgtttgtttttgga 563
||||||||||| |||||| ||||| ||||| |||| |||||||||||||||||||||
Sbjct: 2611 aacaattggataattggaaaaaagtaaagttataaaaaaagataaatgtttgtttttgga 2552
Query: 564 aattatagccgtctttgaagcatttacaatgtcgttgacagagaagataagaagtatttt 623
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 2551 aattatagccgtctttgaagcatttacaatgtcgttgacagagaggaaaagaagtatttt 2492
Query: 624 ctgaatatcagaagcagtggatagcatagaatcaatctcagcccctgtttcatcgactat 683
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2491 ctgaatatcagaagcagtggatagcatagaatcaatctcagcccttgtttcatcgactat 2432
Query: 684 ccatccacagagctttgcatgccgttgttttttaataagaacttttttaacttctgggga 743
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2431 ccatccacagagctttgcatgccgttgttttttaataagaactttttcaacttctgggga 2372
Query: 744 aatgacagcgtatggaagggaaagaggatcaaac-aaatggatgctaacttcaatattnt 802
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 2371 attgacagcgtatggaagggaaagaggatcaaacaaaatggatgctaacttcaatatttt 2312
Query: 803 gtcttcattggggacatcagattttgccgaagcaagattattcaactgtaaggaa 857
||||||||| ||||||||||| | ||| ||||||||||||| ||||||||||||
Sbjct: 2311 gtcttcatttgggacatcagaatatgcagaagcaagattatcgaactgtaaggaa 2257
>3x_Contig782
Length = 2529
Score = 571 bits (288), Expect = e-163
Identities = 313/319 (98%), Gaps = 2/319 (0%)
Strand = Plus / Plus
Query: 50 ttgatcaatgaactgctaacgtgattctggcacgcaaatgttcagtaatatcttctcttt 109
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2212 ttgatcaatgaact-ctaacgtgattctgtcacgcaaatgttcagtaatatcttctcttt 2270
Query: 110 gtaacatatgcgtaaagaaccaacagagccgaacatcgaatatctccgaatgcgatctca 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2271 gtaacatatgcgtaaagaaccaacagagccgaacatcgaatatctccgaatgcgatctca 2330
Query: 170 attcatctaaaagttgctcaactgggatagttgggcaagcaaataacttcataatattca 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2331 attcatctaaaagttgctcaactgggatagttgggcaagcaaataacttcataatattca 2390
Query: 230 ttgacaagttttcaaaagttgaaacagacgatgtatcaacaaatggatttgatatagcat 289
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 2391 ttgacaagttttcaaaagttgaaacagacgatgtttcaacaaatgggtttgatatagcat 2450
Query: 290 tcataatcaaatcttctagagtcaatgaatcgatatctccataatatacttgtaaaccta 349
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2451 tcataatcaaatcttctagagtcaatgaatcgatatctncataatatacttgtaaaccta 2510
Query: 350 a-attcactaaccgcgaaa 367
| |||||||||||||||||
Sbjct: 2511 anattcactaaccgcgaaa 2529
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7442
Number of Sequences: 1807
Number of extensions: 7442
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 2
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)