BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB10FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1790 1516 0.0
>3x_Contig1790
Length = 27369
Score = 1516 bits (765), Expect = 0.0
Identities = 806/816 (98%), Gaps = 3/816 (0%)
Strand = Plus / Plus
Query: 88 ccctgagttttcgagcagtttatcgtcatgtttaaacgtctcatcctatgaagagcttgt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19926 ccctgagttttcgagcagtttatcgtcatgtttaaacgtctcatcctatgaagagcttgt 19985
Query: 148 caagaaaggtcttgctcaacatgcacttttactctggattgtcaaagctcacaatgctaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19986 caagaaaggtcttgctcaacatgcacttttactctggattgtcaaagctcacaatgctaa 20045
Query: 208 gttttataaaagtccccactcgccttcattcgttagcgatacctttaatgatgtcgagcg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20046 gttttataaaagtccccactcgccttcattcgttagcgatacctttaatgatgtcgagcg 20105
Query: 268 caatatcacgatcgaaaaggacgatgtcttagaatacatgcaattttaccaagcgttttt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20106 caatatcacgatcgaaaaggacgatgtcttagaatacatgcaattttaccaagcgttttt 20165
Query: 328 ccctaatctctcacagatgtttcctaaagtgtacagtgtaggaagttggtccataaagga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20166 ccctaatctctcacagatgtttcctaaagtgtacagtgtaggaagttggtccataaagga 20225
Query: 388 cttcattatcgctggtgtggtgatggaccgtattgtatggttgagaatggcaagcaatga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20226 cttcattatcgctggtgtggtgatggaccgtattgtatggttgagaatggcaagcaatga 20285
Query: 448 atatttcctattcgaaaagcaaacatttgatttcaaaagatcctattcctaacagcagta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20286 atatttcctattcgaaaagcaaacatttgatttcaaaagatcctattcctaacagcagta 20345
Query: 508 agagtggcgtagtaccaatccaatacgctgaggcttttatgtcagtagcctggataccta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20346 agagtggcgtagtaccaatccaatacgctgaggcttttatgtcagtagcctggataccta 20405
Query: 568 taccactgactaactaatgctcatcttcacttgatatatcgtcgaattcatttcattcag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20406 taccactgactaactaatgctcatcttcacttgatatatcgtcgaattcatttcattcag 20465
Query: 628 ttacttggattagtcaagtgctgtcaagggccctttaatttactactggttcatttttca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20466 ttacttggattagtcaagtgctgtcaagggccctttaatttactactggttcatttttca 20525
Query: 688 gaaagtccatccctcaattttgtccttctcacaacttcattgttcttcgtggtccgttt- 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20526 gaaagtccatccctcaattttgtccttctcacaacttcattgttcttcgtggtccgttta 20585
Query: 747 ttagcattgcatctttgaattctgcttaataagagattttgtttggattcttttattaag 806
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20586 taagcattgcatctttgaattctgcttaataagagattttgtttggattcttttattaag 20645
Query: 807 gcgcgaaaaactttccactagttagaggacaaccattanactattacgaatatcaacatg 866
||||||||||||||||||||||||||| |||||||| | ||||| |||||||||||||||
Sbjct: 20646 gcgcgaaaaactttccactagttagagaacaaccataaaactataacgaatatcaacatg 20705
Query: 867 agggtaattagaaag-aaagtggtatttcattttta 901
||| ||| ||||||| |||||||||||||| |||||
Sbjct: 20706 aggttaa-tagaaagaaaagtggtatttcaatttta 20740
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5554
Number of Sequences: 1807
Number of extensions: 5554
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)