BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB10RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1307 1576 0.0
>3x_Contig1307
Length = 7280
Score = 1576 bits (795), Expect = 0.0
Identities = 844/855 (98%), Gaps = 4/855 (0%)
Strand = Plus / Plus
Query: 48 ctgcctgacca-ctcgtcaaaagcctcttccgtaatctggtccgtctgaaattgtt-aac 105
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6023 ctgcctgaccaactcgtcaaaagcctcttccgtaatctggtccgtctgaaattgttcaac 6082
Query: 106 aagctggatgaaatctggtaacttctcgtttgtgaacaaggactcaggcaattccctcag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6083 aagctggatgaaatctggtaacttctcgtttgtgaacaaggactcaggcaattccctcag 6142
Query: 166 gtaaagcttgaaacaaccagcaatagtgtttatctcaaaccaccggtcatcttctagtgt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6143 gtaaagcttgaaacaaccagcaatagtgtttatctcaaaccaccggtcatcttctagtgt 6202
Query: 226 aaagacattgtgcactgcgccctcatcgtcaaaggcatttttcagtagattaatgctacc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6203 aaagacattgtgcactgcgccctcatcgtcaaaggcatttttcagtagattaatgctacc 6262
Query: 286 aactgaacccggcacccgatatagaccaacttcatctaggccgcgaagctcaatttcttc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6263 aactgaacccggcacccgatatagaccaacttcatctaggccgcgaagctcaatttcttc 6322
Query: 346 tagaagcttatgaacaatagtcggtgtgagagtgccctctctttcacatatgtcttcgat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6323 tagaagcttatgaacaatagtcggtgtgagagtgccctctctttcacatatgtcttcgat 6382
Query: 406 gggaacaccgaatactttgttagaggttttacctttgtatttcttagagtggaaagaata 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6383 gggaacaccgaatactttgttagaggttttacctttgtatttcttagagtggaaagaata 6442
Query: 466 gcgtttggatagcgctatcgtctttagccactgacttaagtcatgggagtcaatcgtttg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6443 gcgtttggatagcgctatcgtctttagccactgacttaagtcatgggagtcaatcgtttg 6502
Query: 526 gattagatgttcgtttccattttccattaaaattttaaaacaatatatcatcgaagcatc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6503 gattagatgttcgtttccattttccattaaaattttaaaacaatatatcatcgaagcatc 6562
Query: 586 acttgaaaagttattaacattgatgcacttcttaatgtcaaacgtctttattgatagtac 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6563 acttgaaaagttattaacattgatgcacttcttaatgtcaaacgtctttattgatagtac 6622
Query: 646 tggtttctgttcttgaagttcttctttgcttatttttggcagatcgatgggtgccacagc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6623 tggtttctgttcttgaagttcttctttgcttatttttggcagatcgatgggtgccacagc 6682
Query: 706 accattctgttgaattgaattcaccagcatggaattgataccatttgatgagacagatga 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6683 accattctgttgaattgaattcaccagcatggaattgataccatttgatgagacagatga 6742
Query: 766 tgaaaagccgctgatttgaaaaggcctttttgaaaatccaccaatctttct-ccaacacc 824
|||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 6743 tgaaaagccgctgattgaaaaaggccttttgaaaaatccaccaatctttctcccaacacc 6802
Query: 825 attaccactgttagtagcagtggtaataaccgagttcctttgagttattgacgatagatg 884
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 6803 attaccactgttagtagcagtgtaaataaccgagttcc-ttgagttattgacgatagatg 6861
Query: 885 atctcttaggacgag 899
||||||||| |||||
Sbjct: 6862 atctcttagaacgag 6876
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6753
Number of Sequences: 1807
Number of extensions: 6753
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)