BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB11FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1092 1402 0.0
3x_Contig178 817 0.0
3x_Contig1750 291 1e-78
3x_Contig1797 254 3e-67
>3x_Contig1092
Length = 2520
Score = 1402 bits (707), Expect = 0.0
Identities = 824/851 (96%), Gaps = 9/851 (1%)
Strand = Plus / Plus
Query: 88 taatagcgttatgttagagctccctgcaagtatgaaatatggtcc-caagtctggtgcgt 146
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 234 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 293
Query: 147 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 353
Query: 207 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 413
Query: 267 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 473
Query: 327 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 533
Query: 387 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 593
Query: 447 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 653
Query: 507 tctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttagt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttagt 713
Query: 567 caaaactgtatcagttgtagattgagagtgaattgaatatggttacgggatctaatgagt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 caaaactgtatcagttgtagattgagagtgaattgaatatggttacgggatctaatgagt 773
Query: 627 cacgtgatactacttggacaaaggccacctagccacaactcacttcacaatattctataa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 cacgtgatactacttggacaaaggccacctagccacaactcacttcacaatattctataa 833
Query: 687 ggatccaattggttgtattgatgttcctgaacgaaa-tatatatggtacgggattgtttc 745
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 834 ggatccaattggttgtattgatgttcctgaacgaaattatatatgtaacgggattgtttc 893
Query: 746 acgcatagtgaagcaatc-aagctcaag-aattgaggaag-ttcccctacaaaat-taac 801
|||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||
Sbjct: 894 acgcatagtgaagcaatcaaagctcaagaaattgaggaagtttcccctacaaaatataac 953
Query: 802 atctacttattatctagcaaaaatat-aaattccagattgaatgcttaaaagga-tctgt 859
|||||||||||||||||||||||||| |||| | ||| |||||||| |||| || |||||
Sbjct: 954 atctacttattatctagcaaaaatataaaatacaagaatgaatgctaaaaaagagtctgt 1013
Query: 860 cattcaaaatctaatccaaacattccttctacattggtttgaactgggaactatgaacct 919
||||||||||||| ||||| || ||| |||| ||| |||||||| |||||||||||
Sbjct: 1014 cattcaaaatctagtccaacaatccctcgtaca-tggcttgaactgtgaactatgaactg 1072
Query: 920 gatattccttt 930
||||||||||
Sbjct: 1073 aatattccttt 1083
>3x_Contig178
Length = 1315
Score = 817 bits (412), Expect = 0.0
Identities = 478/496 (96%), Gaps = 3/496 (0%)
Strand = Plus / Minus
Query: 88 taatagcgttatgttagagctccctgcaagtatgaaatatggtcc-caagtctggtgcgt 146
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 856 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 797
Query: 147 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 206
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 796 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 737
Query: 207 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 677
Query: 267 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 326
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 676 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 617
Query: 327 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 386
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 616 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 557
Query: 387 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 446
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 497
Query: 447 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 437
Query: 507 tctattg-aacagagataagcagag-gcgtaacgagaaaattaatcttcaatgggactta 564
||||||| |||| | ||||||| || | |||| | ||||||||||||||||| |||||
Sbjct: 436 tctattgcaacacacataagcacagcacctaaccacaaaattaatcttcaatgccactta 377
Query: 565 gtcaaaactgtatcag 580
||||||||||||||||
Sbjct: 376 gtcaaaactgtatcag 361
>3x_Contig1750
Length = 14427
Score = 291 bits (147), Expect = 1e-78
Identities = 266/298 (89%), Gaps = 7/298 (2%)
Strand = Plus / Plus
Query: 580 gttgtagattgagagtgaattgaatatggttacgggatctaatgagtcacgtgatactac 639
|||||| |||||||||||||||| |||||| ||||||| ||||| |||||||||||||||
Sbjct: 13515 gttgtaaattgagagtgaattgattatggtcacgggatttaatgggtcacgtgatactac 13574
Query: 640 ttggacaaaggccacctagccacaactcacttcacaatattctataaggatccaattggt 699
||| | ||||||| | |||||||||||||||||| ||||||||| || | ||||||||||
Sbjct: 13575 ttgaataaaggccgcatagccacaactcacttcagaatattctagaatgctccaattggt 13634
Query: 700 tgtattgatgttcctgaacgaaa-tatatatggtacgggattgtttcacgcatagtgaag 758
|||||||||||| |||||||||| |||||| | |||||||||||||||||||||||||
Sbjct: 13635 tgtattgatgttgctgaacgaaattatataagtagcgggattgtttcacgcatagtgaag 13694
Query: 759 caatc-aagctcaag-aattgaggaagtt--cccctacaaaat-taacatctacttatta 813
||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 13695 caatcaaagctcaagaaattgaggaagtttacccctacaaaatataacatctacttatta 13754
Query: 814 tctagcaaaaatat-aaattccagattgaatgcttaaaaggatctgtcattcaaaatc 870
|||| ||||||||| |||| | ||| ||||| || ||||| |||||||||||||||||
Sbjct: 13755 tctaacaaaaatataaaatacaagaatgaatactaaaaagaatctgtcattcaaaatc 13812
>3x_Contig1797
Length = 34782
Score = 254 bits (128), Expect = 3e-67
Identities = 230/258 (89%), Gaps = 7/258 (2%)
Strand = Plus / Minus
Query: 580 gttgtagattgagagtgaattgaatatggttacgggatctaatgagtcacgtgatactac 639
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct: 32556 gttgtaaattgagagtgaattgaatacggtcacgggatctaatgagtcacgtgatgctac 32497
Query: 640 ttggacaaaggccacctagccacaactcacttcacaatattctataaggatccaattggt 699
||| | ||||||||| |||||||| ||||||||| ||||||||| || | ||||||||||
Sbjct: 32496 ttgaataaaggccacgtagccacagctcacttcagaatattctagaatgctccaattggt 32437
Query: 700 tgtattgatgttcctgaacgaaa-tatatatggtacgggattgtttcacgcatagtgaag 758
|||||||||||| |||||||||| |||||| | |||||||||||||||| |||||||||
Sbjct: 32436 tgtattgatgttactgaacgaaactatataagtaacgggattgtttcacgaatagtgaag 32377
Query: 759 caatc-aagctcaa--gaattgaggaagtt--cccctacaaaat-taacatctacttatt 812
||||| |||||||| ||||||||||||| || |||||||| |||||||||||||||
Sbjct: 32376 caatcaaagctcaaagaaattgaggaagtttacctgtacaaaatataacatctacttatt 32317
Query: 813 atctagcaaaaatataaa 830
||||| ||||||||||||
Sbjct: 32316 atctaacaaaaatataaa 32299
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6710
Number of Sequences: 1807
Number of extensions: 6710
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 4
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)