BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB11RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1743 1324 0.0
>3x_Contig1743
Length = 20172
Score = 1324 bits (668), Expect = 0.0
Identities = 708/719 (98%), Gaps = 2/719 (0%)
Strand = Plus / Plus
Query: 49 tgatttgcggcggtgtgggtattggcactgatgttccatatatcgagtgcattatctagt 108
|||||||||| ||||| |||||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 19456 tgatttgcggtggtgttggtattggca-tgatgttccatatatcgagtacattagctagt 19514
Query: 109 gtactcttcctatttgctccaccgctacttgttggcgcaaccatttacggtaacaagatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19515 gtactcttcctatttgctccaccgctacttgttggcgcaaccatttacggtaacaagatt 19574
Query: 169 agagcaatctctagagaattacaacaggcctctggtaatcttaccaaagtctttatagga 228
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 19575 agagcaatctctagagaattacaacaggcctctggtaatcttaccaaagtcgc-agagga 19633
Query: 229 acaactaagcgggattaaaactgtccaatcctttgttgcagaagggaaagaagtgcatcg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19634 acaactaagcgggattaaaactgtccaatcctttgttgcagaagggaaagaagtgcatcg 19693
Query: 289 ctataacaacgctgtaagacaggtatttaatgttggaaagaaggaagctttcacaaatgc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19694 ctataacaacgctgtaagacaggtatttaatgttggaaagaaggaagctttcacaaatgc 19753
Query: 349 gacttttttcagtagtacaaatgtgttgggtgatttctcatttttgctggtattggccta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19754 gacttttttcagtagtacaaatgtgttgggtgatttctcatttttgctggtattggccta 19813
Query: 409 tggatcgcatcttgttttacaaggaaaccttacaatcggtgatttaactgcgttcatgct 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19814 tggatcgcatcttgttttacaaggaaaccttacaatcggtgatttaactgcgttcatgct 19873
Query: 469 ctatactgaatacactggaagtgcagtatttggtctttccaccttttactcggaattgat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874 ctatactgaatacactggaagtgcagtatttggtctttccaccttttactcggaattgat 19933
Query: 529 gaagggtgctggtgcagctacgagattgtttgaattgcttgattacaaacctactattaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19934 gaagggtgctggtgcagctacgagattgtttgaattgcttgattacaaacctactattaa 19993
Query: 589 atcaactaccgggaaggcgtttaaaccgttaaatggtaaagttgagtttcagcatgtttc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19994 atcaactaccgggaaggcgtttaaaccgttaaatggtaaagttgagtttcagcatgtttc 20053
Query: 649 tttcagttacccaacaagaaaaacaaatcaaatctttaaggatctcaactttacaataga 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20054 tttcagttacccaacaagaaaaacaaatcaaatctttaaggatctcaactttacaataga 20113
Query: 709 gccaggttctaatgtatgtattgtaggtccatcangaagagggaaatctacatttgcct 767
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 20114 gccaggttctaatgtatgtattgtaggtccatcaggaagagggaaatctacaattgcct 20172
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5931
Number of Sequences: 1807
Number of extensions: 5931
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)