BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB12FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig333 767 0.0
3x_Contig1284 418 e-117
>3x_Contig333
Length = 1390
Score = 767 bits (387), Expect = 0.0
Identities = 441/451 (97%), Gaps = 6/451 (1%)
Strand = Plus / Minus
Query: 482 cgcttgaacatttttctttccgtttgagctctcacacattgtgcgcatagtccactgaaa 541
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1387 cgcttgaacatttttctttccgttggagctctcacacattgtgcgcatagtccactgaaa 1328
Query: 542 ttcggtattttgaaattttgaaatttaagactaaaaatcaaaactcatcatcatacggac 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1327 ttcggtattttgaaattttgaaatttaagactaaaaatcaaaactcatcatcatacggac 1268
Query: 602 gacagacaacatccagtcatttcaagaatttactgaaacttgaagggattcaaaaacaat 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 gacagacaacatccagtcatttcaagaatttactgaaacttgaagggattcaaaaacaat 1208
Query: 662 accagatagatagcgctttaataggcagaggcacaaatagatagtcgactgttatcaaga 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 accagatagatagcgctttaataggcagaggcacaaatagatagtcgactgttatcaaga 1148
Query: 722 tttcaaggagtatcagttgtatttatctgctcttcttt-attttattcc-ttcagctttt 779
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 1147 tttcaaggagtatcagttgtatttatctgctcttctttaattttattcctttcagctttt 1088
Query: 780 gttcagacagtttttgaaagtttggtacaatatcccagaccagagaagcgatacagattc 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 gttcagacagtttttgaaagtttggtacaatatcccagaccagagaagcgatacagattc 1028
Query: 840 tgatttaactttacaagtaggtttgcgggatatatttattcgaaaggtaaagaccctaat 899
|||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||||
Sbjct: 1027 tgatttaactttacaagtaggtttgc-ggatatattta-tcgaaagg-aaagacactaat 971
Query: 900 agttacgctttagatttacattgaccctttt 930
|||||||| |||||||||||| ||| |||||
Sbjct: 970 agttacgc-ttagatttacatcgacactttt 941
>3x_Contig1284
Length = 6170
Score = 418 bits (211), Expect = e-117
Identities = 229/234 (97%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 87 cacatcgaccatatggccaaagccaggctatagaaaagcccaaaatctggttacgactaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5937 cacatcgaccatatggccaaagccaggctatagaaaagcccaaaatctggttacgactaa 5996
Query: 147 tatcgacatagcgaattatctttttcacaaccgaagaagaacctatcgcagtttttttgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5997 tatcgacatagcgaattatctttttcacaaccgaagaagaacctatcgcagtttttttgt 6056
Query: 207 gctttattttnggtactt-ggagtactgtttgatattctggtgtgaatctgcggttggaa 265
||||||||| || | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6057 gctttatttctgggatttcggagtactgtttgatattctggtgtgaatctgcggttggaa 6116
Query: 266 ccatcagacatcaagagccaattgttcatccttcacttttagtctttctcaagt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6117 ccatcagacatcaagagccaattgttcatccttcacttttagtctttctcaagt 6170
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7889
Number of Sequences: 1807
Number of extensions: 7889
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 2
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)