BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZB12RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 1402 0.0
>3x_Contig1529
Length = 11812
Score = 1402 bits (707), Expect = 0.0
Identities = 800/822 (97%), Gaps = 8/822 (0%)
Strand = Plus / Plus
Query: 48 agacatcgctcataattggatctgattcgcctgtgagattttcaaatgggtactctttga 107
|||||||||| |||||| ||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 10443 agacatcgcttataattcgatctgattagcctgggagattttcaaatgggt-ctctttga 10501
Query: 108 atgaatacttaccaatttcaactgtttgaaagtgatattgactttttggtgtgaataata 167
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 10502 atgaatacttaccaatttcaactgtttgaaagtgatattgactatttggtgtgaataata 10561
Query: 168 tataagagattatttggatttcctgcagagggaaaaaggcaggaaaggaagcagggatta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10562 tataagagattatttggatttcctgcagagggaaaaaggcaggaaaggaagcagggatta 10621
Query: 228 tataggacatcctatggcctattcactagttcaattgaaccaaaaacttacagcattact 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10622 tataggacatcctatggcctattcactagttcaattgaaccaaaaacttacagcattact 10681
Query: 288 aggctaaccagttgttattcgttcaacgtttcgtatttgctgtataaccactggatacct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10682 aggctaaccagttgttattcgttcaacgtttcgtatttgctgtataaccactggatacct 10741
Query: 348 ttcctcctataactcacgtgatattagggtgatcacgtgagtttcgtaacaaacgactga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10742 ttcctcctataactcacgtgatattagggtgatcacgtgagtttcgtaacaaacgactga 10801
Query: 408 gtaccttgaaaaggcagcaccagtatgaaaaaaattgtttgttcgaaaggcgatatcatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10802 gtaccttgaaaaggcagcaccagtatgaaaaaaattgtttgttcgaaaggcgatatcatg 10861
Query: 468 gaaagattaaaaacgattgcaattgaacaaatatctgtaagttcaacaaatgtacacttt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10862 gaaagattaaaaacgattgcaattgaacaaatatctgtaagttcaacaaatgtacacttt 10921
Query: 528 cgggacccagatttatagctgattgaaagactaccaagggctctaatctttcattttatt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10922 cgggacccagatttatagctgattgaaagactaccaagggctctaatctttcattttatt 10981
Query: 588 ttcagctatccaccaaatggcaggttgtatgttacatgtggttaaactctggaatatttc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10982 ttcagctatccaccaaatggcaggttgtatgttacatgtggttaaactctggaatatttc 11041
Query: 648 ccattaacttgcctttaggttcattctctttttcggtacctgaaa-tatcggttgaaggt 706
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 11042 ccattaacttgcctttaggttcattctctttttcggtacctgaaattatcggttgaaggt 11101
Query: 707 actgcaaggtacattttagtcaaagaactattctcgtatgctataacaggtactaacaac 766
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 11102 actgcaaggtacattttagtcaaggaactattctcgtatgctataacagttactaacaac 11161
Query: 767 attttctaaataaattaatatttatttttttgttaacagcccggttggattgatttggca 826
|||| ||||||||||||||||||||||||||| |||| || ||| |||||||||||||
Sbjct: 11162 atttctaaaataaattaatatttatttttttgtt-acagtcc-gtttgattgatttggca 11219
Query: 827 aagcccttttttggctttttggttcccgaaatttgaacttcc 868
||| || || ||||||||| |||||||||| ||||||||||
Sbjct: 11220 aag-ccattcttggctttt--gttcccgaaa-ttgaacttcc 11257
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8312
Number of Sequences: 1807
Number of extensions: 8312
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)