BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC02FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1714 1520 0.0
>3x_Contig1714
Length = 18873
Score = 1520 bits (767), Expect = 0.0
Identities = 839/855 (98%), Gaps = 6/855 (0%)
Strand = Plus / Minus
Query: 88 ctgctatcaataccgtagacagctggaacgttgctctctttcaaccaagtacctaaagaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5206 ctgctatcaataccgtagacagctggaacgttgctctctttcaaccaagtacctaaagaa 5147
Query: 148 gattgagctaaccagtgagaatattcttcggtgtaatgagcaatgactaaaccagcaaca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5146 gattgagctaaccagtgagaatattcttcggtgtaatgagcaatgactaaaccagcaaca 5087
Query: 208 tgaattctgttggattcaaaataacgtggtaatccttccacgtattcatccattaattta 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5086 tgaattctgttggattcaaaataacgtggtaatccttccacgtattcatccattaattta 5027
Query: 268 cggtcagggacaccgtagttaccaaccaatgggaaagtgataactaaaatctgaccctca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5026 cggtcagggacaccgtagttaccaaccaatgggaaagtgataactaaaatctgaccctca 4967
Query: 328 taagaaggatctgtgatggactctgggtaaccgaccataccagtttggaaaaccaattca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4966 taagaaggatctgtgatggactctgggtaaccgaccataccagtttggaaaaccaattca 4907
Query: 388 ccggctgcagtggtttcggcaccaaaggagtaaccttgtaaagtagttccatcctttaat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4906 ccggctgcagtggtttcggcaccaaaggagtaaccttgtaaagtagttccatcctttaat 4847
Query: 448 tccaaggtaatcatacgatcaccagtagactccattggaggggtgataggagcagtagga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4846 tccaaggtaatcatacgatcaccagtagactccattggaggggtgataggagcagtagga 4787
Query: 508 gtgataatagacataacggaagtttgtattttcttaagcgtaaagggtgtttcaaacgat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4786 gtgataatagacataacggaagtttgtattttcttaagcgtaaagggtgtttcaaacgat 4727
Query: 568 gaactaacctattggatttattttcacttcttttgcttctttaaaagcagcaacgggggg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4726 gaactaacctattggatttattttcacttcttttgcttctttaaaagcagcaacgggggg 4667
Query: 628 ggacttaaaagtaaaataaaacaatgaggttttttacccgattggatcctttctaactat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4666 ggacttaaaagtaaaataaaacaatgaggttttttacccgattggatcctttctaactat 4607
Query: 688 gtgtaataatgaaaagaatcgcactaaatgaatggcaattgatgtttaagtttataattg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4606 gtgtaataatgaaaagaatcgcactaaatgaatggcaattgatgtttaagtttataattg 4547
Query: 748 actctaattttacctctcttagttataggtaagaaattaatcaattaagtggttttttat 807
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4546 actctaattttacctctcttagttataggtaagaaattaatcaattaagtgg-tttttat 4488
Query: 808 ttctttaaaaataaatgtctaatcttagatcgtaatttttttgtggaatttagaaccgtt 867
| |||| ||||| |||||||||||||||||||||| |||||||| ||| ||||||| |||
Sbjct: 4487 tccttt-aaaattaatgtctaatcttagatcgtaa-ttttttgttgaaattagaactgtt 4430
Query: 868 agt-aatcaggccctgatggttcgtgtgaacttccacgcttgttaacaacttt-aggaaa 925
||| |||||||||||||| ||||||||||||||||||||| |||| ||||| || |||
Sbjct: 4429 agtaaatcaggccctgat-gttcgtgtgaacttccacgctgtttaaacactttcagcaaa 4371
Query: 926 aaacttcgctagctt 940
|||||||||||||||
Sbjct: 4370 aaacttcgctagctt 4356
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6764
Number of Sequences: 1807
Number of extensions: 6764
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)