BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC02RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig883 1667 0.0
>3x_Contig883
Length = 3346
Score = 1667 bits (841), Expect = 0.0
Identities = 868/875 (99%), Gaps = 2/875 (0%)
Strand = Plus / Plus
Query: 63 aaaattgagattgttatgtagtggtccgttgtcttaattaaggacgtggaattggatgca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 aaaattgagattgttatgtagtggtccgttgtcttaattaaggacgtggaattggatgca 1478
Query: 123 catacaaaataaactgtctgatattgcccgatgagaaccgaaacttccattcagaaattg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 catacaaaataaactgtctgatattgcccgatgagaaccgaaacttccattcagaaattg 1538
Query: 183 ttgcgaatggactgagactaacattaccatgttcacaaagtacgggttaactaagccttc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 ttgcgaatggactgagactaacattaccatgttcacaaagtacgggttaactaagccttc 1598
Query: 243 agaataggtttttgtatattttcattacatgaacggtaaagtagtagtacctgcagaaaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 agaataggtttttgtatattttcattacatgaacggtaaagtagtagtacctgcagaaaa 1658
Query: 303 aatgtacctgttttgaaagaaatagacatcgattatacacatttctcgagaacagaaaca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 aatgtacctgttttgaaagaaatagacatcgattatacacatttctcgagaacagaaaca 1718
Query: 363 aaaagaaatgccgttctttggacttctaaaataattaagatcgaagtttctccgacgggg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 aaaagaaatgccgttctttggacttctaaaataattaagatcgaagtttctccgacgggg 1778
Query: 423 cctttactgaagcaatcagcttaaactttccagtcaaagcctccagatattatgtcgcct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 cctttactgaagcaatcagcttaaactttccagtcaaagcctccagatattatgtcgcct 1838
Query: 483 acaatttccttttcggttagtatcagtaccaatatcatgcagcactgataagaaccttgt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 acaatttccttttcggttagtatcagtaccaatatcatgcagcactgataagaaccttgt 1898
Query: 543 tttttctgtcggtcaaaatgtttcttatctgaaaagaagaagagtccgaaaaaactctat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1899 tttttctgtcggtcaaaatgtttcttatctgaaaagaagaagagtccgaaaaaactctat 1958
Query: 603 tacgggttatctgacccagctcaaacctggtcgctctcgagcattgagatacagaacatg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1959 tacgggttatctgacccagctcaaacctggtcgctctcgagcattgagatacagaacatg 2018
Query: 663 tcttcaataacactgatacttacttaatatgagtgggttgtttcacttaaattttcgcaa 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2019 tcttcaataacactgatacttacttaatatgagtgggttgtttcacttaaattttcgcaa 2078
Query: 723 tgataacggcaaccgttgaaaacctatgcacctctttctcaatggggtacagcaatgcgg 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2079 tgataacggcaaccgttgaaaacctatgcacctctttctcaatggggtacagcaatgcgg 2138
Query: 783 acaaaaacgcagcccaaagtgctattttgtcgtcataatagctgcgatttgttnttcgcc 842
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 2139 acaaaaacgcagcccaaagtgctattttgtcgtcataatagctgcgatttgttttccgcc 2198
Query: 843 atcagataagaaagacagcatcatcaagcaattcgtaagatagtaaaatactgagcattt 902
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||
Sbjct: 2199 atcagataagaaagacagcatcatcaagcaatacgtaagatagt-aaatactgagcaatt 2257
Query: 903 gnatcatctacttttcacttagatccaaagtcaaa 937
| ||||||||| |||||||||||||||||||||||
Sbjct: 2258 gtatcatctac-tttcacttagatccaaagtcaaa 2291
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6983
Number of Sequences: 1807
Number of extensions: 6983
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)