BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC03RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1588 0.0
>3x_Contig1772
Length = 25851
Score = 1588 bits (801), Expect = 0.0
Identities = 879/897 (97%), Gaps = 6/897 (0%)
Strand = Plus / Minus
Query: 49 aatcccattttccttacgacatcctgggaaagttgcttgccattgcatgccaggagatat 108
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 16032 aatcccattttcattacgacatcctgggaaagttgtttgccattgcatgccaggagatat 15973
Query: 109 taggagtccggggcctaatttattgcaggtactgcttagagggtttggaactccgataga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15972 taggagtccggggcctaatttattgcaggtactgcttagagggtttggaactccgataga 15913
Query: 169 acaggaaatatcatatccatcttctatttccttcaagtttatattgtttatttcaattct 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15912 acaggaaatatcatatccatcttctatttccttcaagtttatattgtttatttcaattct 15853
Query: 229 ttcaattgtgtcataaatttcggctgagagatgcctaagtgtatcaatcacacttttcca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15852 ttcaattgtgtcataaatttcggctgagagatgcctaagtgtatcaatcacacttttcca 15793
Query: 289 taaaccgaaatctctccaatacaactttgctttgtttatactcaataaaacaatttcgtg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15792 taaaccgaaatctctccaatacaactttgctttgtttatactcaataaaacaatttcgtg 15733
Query: 349 tgagaaaactctctttttcaacttcagatccatactactccataagttaagtccatcgta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15732 tgagaaaactctctttttcaacttcagatccatactactccataagttaagtccatcgta 15673
Query: 409 cttcttctcccaaatttgtttcaaaattggaatcaactgctctgtgttgggcttcactaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15672 cttcttctcccaaatttgtttcaaaattggaatcaactgctctgtgttgggcttcactaa 15613
Query: 469 tactaacagatccaagtcagtggtactattttgctgaatgttaatacatgtagtgttggg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15612 tactaacagatccaagtcagtggtactattttgctgaatgttaatacatgtagtgttggg 15553
Query: 529 tataataatttttcccaatgaaacgacgtcggtgtcgttttcttgcttgaaagtgtctaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15552 tataataatttttcccaatgaaacgacgtcggtgtcgttttcttgcttgaaagtgtctaa 15493
Query: 589 actgttcaaatcgaaacacagttccttcataatcctagtcccggcaaaagagataagctt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15492 actgttcaaatcgaaacacagttccttcataatcctagtcccggcaaaagagataagctt 15433
Query: 649 cttttgtcgttccgatacggctgatccagcttcataatctaaaccacaccga-gatttta 707
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 15432 cttttgtcgttccgatacggctgatccagcttcataatct-aaccacaccgaggatttta 15374
Query: 708 ctccaagtttgtagtaccgcttctcgtcaatgtatgtccatccgttaaatgaaatatcat 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15373 ctccaagtttgtagtaccgcttctcgtcaatgtatgtccatccgttaaatgaaatatcat 15314
Query: 768 tgatttcaacatttgtgatatcttcaatatgctcctttaatgaaacatcatctgggagca 827
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||
Sbjct: 15313 tgatttcaacatttgtgatatctccaatatgctccttaaatgaaacatcatctggaagca 15254
Query: 828 cagattttacatattttagacccagaaatatggtagtaggtaatagcacaatggaatgct 887
||||||| |||||| | |||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 15253 cagatttaacatatataagacccagaaatatggtagtagttaatagcacaat-gaatgct 15195
Query: 888 at-attcccgcagttacttctattcctggacgaattgtggaaatcgtttcgagggct 943
|| ||||||||||| || ||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 15194 ataattcccgcagtaac-tctattcctggacgatttgtgg-aatcggttcgagggct 15140
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7579
Number of Sequences: 1807
Number of extensions: 7579
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)