BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZC04FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1170 894 0.0
>3x_Contig1170
Length = 4668
Score = 894 bits (451), Expect = 0.0
Identities = 526/543 (96%), Gaps = 6/543 (1%)
Strand = Plus / Plus
Query: 385 ggtgaaggaagatgcaatgtagaggggaagccgcagcacggccatttccccttctttttt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgaaggaagatgcaatgtagaggggaagccgcagcacggccatttccccttctttttt 60
Query: 445 ttttgttacaccgtcaacgatgtataagtattagattcttgtacgaattcttgcgacaaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttgttacaccgtcaacgatgtataagtattagattcttgtacgaattcttgcgacaaa 120
Query: 505 ggtcttccattattgagcgagccatacgatagcacggccgcagaggaagtagacgatgat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtcttccattattgagcgagccatacgatagcacggccgcagaggaagtagacgatgat 180
Query: 565 ggtgaatgagagccatccaattcagagagaaacttcgaatcgtgaaccaaagattcttca 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtgaatgagagccatccaattcagagagaaacttcgaatcgtgaaccaaagattcttca 240
Query: 625 aagtagtagatggatgcagaaatgcgtaccactccgatggttagcactatgaaaccgaac 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagtagtagatggatgcagaaatgcgtaccactccgatggttagcactatgaaaccgaac 300
Query: 685 acaagccctgtgtataaaatctcggctgtatgcggtaccaatgaatcgtgatagaacatt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acaagccctgtgtataaaatctcggctgtatgcggtaccaatgaatcgtgatagaacatt 360
Query: 745 gtactgttcaagattgtagtcaaattatagatggagaacacaaacggataaaggatcgat 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtactgttcaagattgtagtcaaattatagatggagaacacaaacggataaaggatcgat 420
Query: 805 gtagaaagatgaaaaagccttg-ggtcaacaaataccactgagtc-acgaggaagtttcc 862
|||||||||||| |||||| || | ||||||||||| |||||||| ||||| ||||| ||
Sbjct: 421 gtagaaagatgagaaagccctgcgttcaacaaatacaactgagtcaacgagaaagttacc 480
Query: 863 aat-cccaaacgagcaaga-cttttgt-aagagatggacctttca-ttacgataacgttc 918
||| || |||||||||||| | | ||| |||||||||||| |||| | ||||||||||||
Sbjct: 481 aataccaaaacgagcaagaccatatgtaaagagatggaccattcagtaacgataacgttc 540
Query: 919 gac 921
|||
Sbjct: 541 gac 543
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,629
Number of Sequences: 1807
Number of extensions: 15629
Number of successful extensions: 300
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)